Aliisedimentitalea scapharcae: QEZ52_11370
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Entry
QEZ52_11370 CDS
T10791
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asca Aliisedimentitalea scapharcae
Pathway
asca03030
DNA replication
asca03410
Base excision repair
asca03420
Nucleotide excision repair
asca03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QEZ52_11370 (ligA)
03410 Base excision repair
QEZ52_11370 (ligA)
03420 Nucleotide excision repair
QEZ52_11370 (ligA)
03430 Mismatch repair
QEZ52_11370 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asca03032
]
QEZ52_11370 (ligA)
03400 DNA repair and recombination proteins [BR:
asca03400
]
QEZ52_11370 (ligA)
Enzymes [BR:
asca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QEZ52_11370 (ligA)
DNA replication proteins [BR:
asca03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QEZ52_11370 (ligA)
DNA repair and recombination proteins [BR:
asca03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QEZ52_11370 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QEZ52_11370 (ligA)
MMR (mismatch excision repair)
DNA ligase
QEZ52_11370 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QEZ52_11370 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
TubC_N
HHH
DUF4796_N
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WZK87231
UniProt:
A0ABZ2XRA1
LinkDB
All DBs
Position
2405218..2407338
Genome browser
AA seq
706 aa
AA seq
DB search
MEHPVENLSPETAREEFLELQTLLWAANREYHSSDSPSISDAEYDAAKRRYLALIEAFPV
LAASATQKDTVGAPVDDGFGKVTHDVRMLSLGNAFEDGDVQAFDASIRKYLGLSADAPLA
YTAEPKIDGLSLSLRYEKGHLIQAATRGDGETGENVTANARMIQGLPQTIQGAPDLLEVR
GEVYMSHADFADLNARQTNNGDKVFANPRNAAAGSLRQLDARVTETRPLRFFAYSWGALS
EPLASTQMAAIKRLADLGFETNPLTKKCETPETLLAHYRDIEAQRAGLGYDIDGVVYKVD
DLSLQGRLGFRSTTPRWAIAHKFPAELAWTRLEGIDIQVGRTGTLSPVARLTPVTVGGVV
VSNATLHNEDYIQGRDSKGEEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLSKRPEGALA
FVFPDTCPECGSDAVREDGDAARRCVGGIICPAQAVEKLKHFVARKAFDIEGLGAKQIEM
FYEDEQLPIRSPVDIFTLQDRDANNFTKLANRKGWGAQSVNNLWQAIEEKRKIGFGRLLF
ALGIRHVGEAASNLIANHYGTWEDFEAAISKASDHEGPEWDGLLSIDGVGEVMARALVAA
FEQDAERASIDALIAQLEVQKAERPKIADSPVVGKIVVFTGTLEKMSRAEAKSRAEALGA
KVSGSVSKKTDLLVAGPGAGSKAKKAAELGVETVDEDGWLALIEGL
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtggaacatccggtcgaaaacttgtcgccagaaactgcgcgcgaagaatttctggagctt
cagactttgctctgggccgccaacagagaataccacagcagcgattctccatcgatctcc
gacgccgagtatgatgccgccaaacgccggtatctggccctgatcgaggcattcccggtt
ttggccgccagcgcgacccaaaaagatacggttggcgcaccggtcgatgatggtttcggc
aaggtcacgcatgacgtccgaatgctgtctctgggcaacgcgtttgaggatggcgacgtt
caggcgtttgacgcgtccatccgcaaatacctgggtctgtcggcggatgcaccattggcc
tatacagccgagcccaaaattgatgggctttcgttgtcattgcggtacgaaaagggccat
ctgattcaggcggcaacacgcggagatggcgaaaccggcgagaatgtcaccgcaaatgcc
cgaatgatccaaggacttcctcagacgatccagggcgcaccagatctgttggaggtgcgg
ggcgaggtctatatgtcccatgcggattttgccgatctgaacgcgcgccaaacaaacaat
ggcgacaaggtttttgccaacccgcgcaatgcggctgcggggtcgttgcgacaattggat
gctcgggtcaccgaaacgcggccattgcgattctttgcttacagttggggcgccttgtcc
gaaccactggcatccacgcaaatggctgcgatcaaacggctggccgatctggggtttgaa
accaacccattgaccaagaagtgtgaaacgcctgaaacgctgttggcacattaccgggac
atcgaagcgcagcgtgccggtttgggctatgacattgacggggtggtttacaaggttgac
gacctgtccttgcaggggcggctggggtttcgctcgaccacgccccgttgggcgatcgcg
cataaatttccggccgaactggcctggacccggctcgaagggatcgacattcaggttggg
cggaccggcacgctcagcccggtcgcccgtctgaccccggttaccgtcggtggcgttgtg
gtctccaacgccacgctgcacaacgaagattacattcagggtcgcgattccaaaggcgaa
gagatccgtggcggcaaggatattcgggttggtgattgggtacaggtctatcgcgccggg
gatgtgattccgaaagtggccgatgtggatctgtcgaaacggccagagggggcattggcg
ttcgtgttccctgatacctgtcccgaatgtggcagcgacgcggtgcgcgaagatggagat
gcggcacggcgctgtgttggaggcattatttgcccggcccaagctgttgagaagctgaaa
cattttgtcgcgcgcaaggcctttgatatcgaagggctgggtgccaagcagattgagatg
ttctatgaagatgaacagttgcccattcgcagcccggttgacatctttaccctgcaagac
cgggacgcgaacaattttaccaaactggccaatcgcaagggttggggcgcgcaaagtgtg
aacaacctgtggcaggcgattgaagagaaacgaaaaattgggtttggacgattgttgttt
gcactcggcatccggcacgttggcgaagcggcatcgaatttgatcgccaatcactatggc
acctgggaggattttgaagccgcaatcagcaaggcgtctgaccacgaaggtccagagtgg
gacgggctgttatccatagacggagtgggcgaggtcatggctcgggcgcttgtggcggcc
tttgagcaggatgcggaacgggcctcgattgacgctctgattgctcagttggaagtgcaa
aaggcggaacgccccaaaatcgccgacagcccggttgttggaaagatcgtcgtgttcacc
ggaaccttggaaaagatgagccgggccgaagccaaatcccgtgccgaggcactgggtgcc
aaggtctctggctcggtgtccaagaaaaccgatttgctggttgcaggtcccggcgcagga
tccaaggccaaaaaggcggcggaattgggggttgaaaccgtggatgaagacggttggttg
gcgttgatcgagggattatga
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