Hoyosella subflava: AS9A_3213
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Entry
AS9A_3213 CDS
T01514
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asd
Hoyosella subflava
Pathway
asd03030
DNA replication
asd03410
Base excision repair
asd03420
Nucleotide excision repair
asd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AS9A_3213 (ligA)
03410 Base excision repair
AS9A_3213 (ligA)
03420 Nucleotide excision repair
AS9A_3213 (ligA)
03430 Mismatch repair
AS9A_3213 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asd03032
]
AS9A_3213 (ligA)
03400 DNA repair and recombination proteins [BR:
asd03400
]
AS9A_3213 (ligA)
Enzymes [BR:
asd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AS9A_3213 (ligA)
DNA replication proteins [BR:
asd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AS9A_3213 (ligA)
DNA repair and recombination proteins [BR:
asd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AS9A_3213 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AS9A_3213 (ligA)
MMR (mismatch excision repair)
DNA ligase
AS9A_3213 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AS9A_3213 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Nlig-Ia
PTCB-BRCT
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AEF41658
UniProt:
F6ENI9
LinkDB
All DBs
Position
complement(3291208..3293292)
Genome browser
AA seq
694 aa
AA seq
DB search
MTANQGPAPDEAREEWQRLAEDVRGHQFRYYVKDAPIISDGEFDELLKRLQVLEDKYSDL
RTPDSPTQLIGGGFATEFAPIDHLERMLSLDNVFSEDELREWTHRVEAEAGTGLHYLCEL
KIDGVALSLVYEKGRLVRAATRGDGRTGEEVTLNARTIDDVPERLSTTTDFPIPDLLEVR
GEVFFRLEDFAALNAALTGEGKPPFANPRNSAAGSLRQKNPAVTARRKLRMICHGIGKRE
GFTPQSQYEAYQALKAWGLPVSEHTVRVRGADEIVAQVQLWEERRHEIEHEVDGLVVKVD
EVTLQRRLGSTSRAPRWATAYKYPPEEATTKLLDIRVNVGRTGRVTPFAYMEPVTVAGST
VSLATLHNGDEVKRKGVLIGDTVVIRKAGEVIPEVLGPVVDLRDGTEREFAMPSVCPECG
AVLAPSKEGDVDIRCPNQRTCPAQLRERVFYIGSRGALDIEGLGYEAATALLAHQVITDE
GDLFTLTSDDLLKTELFRTKAGALSANGKRLLEHLEKTKSQPLWRVIVSLSIRHVGPTAA
RALATEFGSLDAVAAASLEELAAVDGVGPTIAQAVTEWFDVDWHRDIVRKWADAGVRMAD
ERDASIARTLEGLSIVVTGSLDGFSRDEAKEAILTRGGKAAGSVSKKTAFVVVGDAPGSK
YDKAVDLGVPVLDEDGFRKLLADGPDAVSPLGPP
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgacagcgaatcaaggtccagcgcccgatgaggcgcgcgaagaatggcagcggcttgcg
gaggacgtacgcgggcaccagttccgctactacgtgaaagacgcgccgatcatcagcgac
ggcgagttcgatgagttgctgaagcggctccaggtgcttgaggacaagtactcggatctg
cggactccggattcgcccacgcaactcattggcggcggctttgcgacagagttcgcgccg
atcgaccacctcgagcggatgctcagcctcgacaacgtcttcagtgaagacgagcttcgt
gagtggacgcaccgtgtggaggctgaggccggcacaggcctgcattacttgtgcgagctc
aagatcgacggtgtcgcgctgagtctggtgtatgaaaaaggcaggctagttcgggcagcg
accaggggggatggccggacgggtgaggaagttacgctcaacgcccgcacgatcgacgat
gtgcccgagaggctgagtacaaccaccgatttcccgatccctgatctgctcgaagtgcgt
ggggaggtgttcttcagactcgaggacttcgctgcgctgaacgcggccctgacaggggag
ggaaaaccaccgttcgcgaacccgcgcaattcagcagcaggttcactgcggcagaagaac
ccggccgtcacggcgcgacggaagctgaggatgatctgccatggaatcggtaagcgcgaa
ggattcacaccccaatcgcagtacgaggcctatcaggcgctgaaagcctgggggctgcct
gtttcagagcacaccgtgcgggttcgcggtgcggatgagatcgtcgctcaggttcagctg
tgggaggaacggcgccacgagatcgagcacgaggtggatgggctcgtcgtgaaggtcgac
gaggtgacgttgcagcggcgcctcggttcgacgtcccgcgcgccgcgatgggcgactgcg
tacaagtacccacccgaggaggcaacgaccaagctgctcgatatccgggtcaacgtcggg
cgcaccggccgggtcacgccgttcgcgtacatggagccggtgacggtcgcgggttcaacc
gtgtcgctcgccacgctgcacaacggcgatgaggtgaaacgcaaaggtgtgctcattggc
gacactgtcgtcattcgtaaggcaggagaagtgatcccggaggttcttgggcctgtggtt
gacctccgcgacggtacagagcgcgaatttgcgatgccgtcggtatgtccggaatgcggt
gccgtgcttgcgccgtccaaggagggtgacgtcgatattcgctgcccaaatcagcgaaca
tgcccggcgcaactgcgggaacgcgtcttctacattggcagccgtggcgcgctggacatt
gagggtctgggttatgaagcggccaccgcactgctggcgcaccaggtgatcaccgatgaa
ggcgacttgttcacgctcaccagtgacgatcttctgaaaacagaactgttccgcaccaag
gcgggcgcgttgtccgcaaacggcaaacgcttactcgagcacctcgagaaaacgaagtca
caaccgctctggcgggtcatcgtgagtctgtccatacggcacgtcggccccacagccgcg
cgcgccttggctaccgagttcggcagcctcgacgcggtcgcggcggcatccctggaagaa
ctcgccgcggtcgatggcgtcgggcccacaattgcgcaggccgtcactgagtggttcgac
gtggattggcaccgcgatatcgtgcggaagtgggctgacgcgggggtgcggatggccgac
gaacgcgacgcctcgatcgcccggacgctcgaggggctctccatcgtcgtgactgggtca
cttgacgggttctcgcgagacgaggcgaaagaagcaatcctgacacgaggcggaaaagca
gcaggctcagtgtcaaagaagaccgcgttcgtcgtggtgggtgacgcgcccggctcgaag
tacgacaaggcggttgacctcggcgtccctgtcctcgacgaagacggattccggaagctg
cttgcggacggccccgatgccgtgagcccattgggccccccgtga
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