Actinoplanes sp. SE50/110: ACPL_3138
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Entry
ACPL_3138 CDS
T02044
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ase
Actinoplanes sp. SE50/110
Pathway
ase03030
DNA replication
ase03410
Base excision repair
ase03420
Nucleotide excision repair
ase03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ase00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ACPL_3138 (ligA)
03410 Base excision repair
ACPL_3138 (ligA)
03420 Nucleotide excision repair
ACPL_3138 (ligA)
03430 Mismatch repair
ACPL_3138 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ase03032
]
ACPL_3138 (ligA)
03400 DNA repair and recombination proteins [BR:
ase03400
]
ACPL_3138 (ligA)
Enzymes [BR:
ase01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ACPL_3138 (ligA)
DNA replication proteins [BR:
ase03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ACPL_3138 (ligA)
DNA repair and recombination proteins [BR:
ase03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ACPL_3138 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ACPL_3138 (ligA)
MMR (mismatch excision repair)
DNA ligase
ACPL_3138 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ACPL_3138 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
BRCT
PTCB-BRCT
DUF7575
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
AEV84033
UniProt:
G8SD23
LinkDB
All DBs
Position
complement(3428528..3430636)
Genome browser
AA seq
702 aa
AA seq
DB search
MPTEPEIAPVVDAAHAEPFDTAADYRAAIERIRAAAAAYYAGTDLAMDDATYDALLARVT
ATEAARPGWTVAESPSDTVGAGGGVTGDVQHSTPMLSLANVFDPDELLAWAARLDRVLGR
PAAGYTVEPKIDGMAIAARYTDGRLVQVATRGDGRAGEDVTAQARTVAGLPAELTRPVTV
EVRGEVFMTDEDFTRANELRTGHGGAPFANPRNAAAGTLRAQDRAYVAPLSFLAYAVHDL
PGGEGLTHSAAMAAIAELGVATTGGSAAGMAVCATADELVAAISRLGALRDKLGFDIDGV
VVKADSPADRDAAGSSSRAPRWAIAYKFPADTRTSRLTAIEVQVGRTGLITPVAVIEPVQ
VGGVVVTSATLHNFGDLVRRDVRVGDTVFVRRAGEVIPEITGAKLDERPEGAEPFAAPEH
CPRCGGDIDRSQKRWRCVQGRACGATESLAYFAARDSMDIEGLGDKVIRALVTAGLVTDP
ADLYDLDADTLARLERLGRTSAAKLVANIQASKQQPLSRVLTGLGVRMTGRSMSRRLARH
FGTMEALCAATVDQLQEVAAVGPERAATIAAELADLAPVIAKLTERGITMSEPGVTPYHE
RVVATAETGLPLQKEDGTPMTVVVTGSVPGLTRNEGNEAVERLGGKSSGSVSKRTDLVVV
GDGAGSKAAKAEELGVRIMASDRFAALLAAHDAGEAPALDDY
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgcctaccgagcccgagatcgcccccgtcgtcgacgcggcgcacgccgagccgttcgac
accgccgcggactaccgcgcggcgatcgagcggatccgggcggccgccgcggcctactac
gcgggcaccgacctggccatggacgacgccacctacgacgcgctgctggcccgggtcacc
gccaccgaggccgcgcgacccgggtggacggtcgccgagtcgcccagcgacacggtcggc
gccggcggcggcgtcaccggcgacgtgcagcacagcaccccgatgctgagcctggccaac
gtcttcgaccccgacgagctgctcgcctgggcggcccggctggaccgggtcctcggccgg
cccgccgccggctacaccgtggagccgaagatcgacggcatggcgatcgccgcccgctac
accgacggccggctggtccaggtcgccacccgcggcgacgggcgggccggggaggacgtc
accgcccaggcccggacggtcgccggcctgccggccgagctgacccggccggtcaccgtc
gaggtgcgcggcgaggtgttcatgaccgatgaggacttcacccgggccaacgaactgcgt
accgggcacggcggcgcaccgttcgccaacccgcgcaacgcggcggccggcacgctgcgc
gcgcaggaccgggcgtacgtcgcgccactctccttcctagcgtacgcggtgcacgacctg
cccggcggcgagggcctcacgcacagcgcggcgatggcggcgatcgccgagctcggggtg
gccacgaccggtggctcggcggccggcatggcggtctgcgccaccgccgacgagctggtc
gcggcgatcagccgcctcggcgcgctccgcgacaaactcggcttcgacatcgacggcgtg
gtcgtcaaggccgactcccccgccgaccgggacgccgccgggtcgtccagccgggcgccg
cgctgggcgatcgcctacaagttcccggccgacacccgcaccagccggctcaccgcgatc
gaggtgcaggtcggccggaccgggctgatcaccccggtcgcggtgatcgagccggtccag
gtcggcggcgtggtggtcacctcggccaccctgcacaacttcggcgacctggtgcggcgc
gacgtgcgggtcggcgacacggtcttcgtccggcgggccggcgaggtgatcccggagatc
accggggccaaactcgacgagcggcccgagggcgccgagccgttcgccgcgccggagcac
tgcccgcgctgcggcggcgacatcgaccggtcgcagaaacgctggcgatgcgtgcagggc
cgggcgtgcggcgccaccgagtccctggcgtacttcgcggcccgcgactcgatggacatc
gagggtctcggcgacaaggtgatccgcgcgctggtcacggccggcctggtcaccgacccg
gccgatctgtacgacctggacgccgacacgctcgcccggctcgagcgcctcggccgcacc
tcggcggcgaaactggtcgccaacatccaggcctccaaacagcagccgctgtcccgggtg
ctgaccggcctcggcgtgcggatgaccgggcggtcgatgtcgcgccggctggcccggcac
ttcggcaccatggaggcgctctgcgcggcgaccgtcgaccagctgcaggaggtggcggcg
gtcgggccggaacgtgccgccaccatcgcggccgagctggccgacctggcgccggtcatc
gccaagctcaccgagcgcgggatcacgatgagcgagccgggagtgacgccctaccacgag
cgggtggtggcgacggcagagaccgggctgccgttgcagaaggaggacggcacgccgatg
acggtggtggtgaccggatcggtgccgggcctgacccgcaacgagggcaacgaggcggtg
gaacgcctcggcggcaagtcgtccgggtcggtgtcgaaacggaccgacctggtggtggtc
ggtgacggcgccgggtcgaaagcggcgaaagctgaggagctgggggtccggatcatggcg
tcggaccggttcgcggcgctgctcgccgcgcacgacgccggggaggcgccggcgctcgac
gactactga
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