Brevibacillus sedimenti: IRT44_08090
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Entry
IRT44_08090 CDS
T07711
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ased
Brevibacillus sedimenti
Pathway
ased03030
DNA replication
ased03410
Base excision repair
ased03420
Nucleotide excision repair
ased03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ased00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IRT44_08090 (ligA)
03410 Base excision repair
IRT44_08090 (ligA)
03420 Nucleotide excision repair
IRT44_08090 (ligA)
03430 Mismatch repair
IRT44_08090 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ased03032
]
IRT44_08090 (ligA)
03400 DNA repair and recombination proteins [BR:
ased03400
]
IRT44_08090 (ligA)
Enzymes [BR:
ased01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IRT44_08090 (ligA)
DNA replication proteins [BR:
ased03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IRT44_08090 (ligA)
DNA repair and recombination proteins [BR:
ased03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IRT44_08090 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IRT44_08090 (ligA)
MMR (mismatch excision repair)
DNA ligase
IRT44_08090 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IRT44_08090 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
HHH_8
Zn_ribbon_NUD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UFJ62691
LinkDB
All DBs
Position
1653138..1655156
Genome browser
AA seq
672 aa
AA seq
DB search
MDRLTAEARIRELREQIERHNRLYYVEDRPEITDQEYDMLMRELQDLEDLFPDMVTPDSP
TQRIGGEPLPFFEKVVHKTPMLSLSNAFDDEDLRDFDRRVRQTVGSQTVHYVCELKIDGL
AVSLHYENGLFVKGATRGDGTTGEDITQNLRTIRSIPLRLTRPLTLEVRGEAYMPRSAFE
KLNREREERGEALFANPRNSAAGSLRQLDPKIAASRQLDTFIYSIGELQGESVESHSEGL
NLLESLGFKVNPERRVFDNIEDVIEFVHGWTDKRRNLPYDIDGMVIKVDSYAQQQELGFT
AKSPRWAIAYKFPAEEAVTILEGIEVSVGRTGTVTPTALLKPVSLAGTTVKRASLHNEDI
IREKGLLIGDHVVVKKAGDIIPEIVAVLPERRTGGEVPFSMPTHCPECGSELVRLDDEVA
LRCINPMCPAQIREGIIHFVSRQAMNIEGLGEKVVAQLFNAGIIHSVADLYYLHQQRDVL
LGMERMGEKSVDNLLAAIEASKENSLERLLFGLGIRLVGAKAARVLAEHFGDMDAIMRAS
EEELTQINEIGPKMAASLVNYFRQPQAEAVIERLKAAGVNMTYKGVRAESGADLPLAGKT
IVLTGTLSSMTRQEAEEAITRLGGKVTGSVSKKTDLVIAGEKAGSKLEKAEKLGVAVMDE
AGFLQLLEGNNK
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaccgattgacggcagaagcacgaattcgcgaactgcgggaacaaatcgagcggcat
aaccgtctgtattacgtagaggaccgaccggaaattacggaccaggaatacgacatgctc
atgcgggaactgcaggatctggaagacctgttcccggacatggtgacgcccgattcgccg
acacagcggatcgggggcgaaccgctgcccttttttgaaaaagtggtgcacaagacgccg
atgctcagcctgagcaacgcgtttgacgacgaggacctgcgcgactttgaccggcgcgtg
cggcagacggtgggcagccagaccgtccactacgtctgtgagctgaaaatcgacgggctg
gccgtctccctgcactacgaaaacggcttgttcgtcaagggggcgacccgcggtgacggc
accaccggagaggacatcacgcagaatctccggacgatccggtccatcccgctgcgcttg
acccggccgctgacactggaggtgcggggcgaggcgtacatgccgcgcagcgcgtttgaa
aagctgaaccgggagcgggaagagcggggggaagcgctgtttgccaacccgcgcaactcg
gcggccggttcgctgcgccagctcgatccgaaaattgccgcgtcccgccaactggacacg
tttatctacagcatcggcgagctgcagggggagagcgtggagtcgcacagcgaagggctt
aacctgctggagtcgctgggcttcaaggtcaacccggagcgacgggtgtttgacaacatc
gaggatgtgatcgaattcgtccacggctggacggacaagcggcggaacctgccgtacgac
atcgacggcatggtgatcaaggtggacagctacgcccagcagcaggaactgggctttacc
gccaaaagcccgcgctgggcgatcgcctacaaattcccggcggaagaggcggtcacgatt
ctggagggcatcgaggtgtccgtgggccgcacggggacagtcactccgaccgccctgctg
aagccggtcagcctggcgggaacgacggtcaaacgggcttccctgcacaacgaggacatc
atccgggaaaaggggctgttgatcggcgaccacgtggtggtcaagaaggcgggggacatc
atccccgagattgtggccgtcctgcccgaacggcgaaccggcggggaagtgccgttttcc
atgccgacgcactgtccggaatgcggcagcgaactggttcgcctggacgatgaggtggcc
ctgcgctgcatcaatccgatgtgtccggcgcagattcgcgaaggcatcatccacttcgtt
tcccggcaggcgatgaacatcgaggggctcggagagaaagtggtggcccagctgtttaac
gccggcatcattcacagcgtcgccgacctctactatctgcaccagcagcgggacgtgctg
ctcggcatggagcggatgggcgaaaagtcggtcgacaacctgctggcggcaatcgaagcc
agcaaggaaaactcgctggagcggctgctgtttggcctcggcatccgcctcgtcggagcc
aaggcggcgcgcgtcctggccgaacacttcggcgacatggacgccatcatgcgcgccagt
gaggaagaactgacgcagatcaacgagatcggaccgaaaatggctgccagcctcgtcaac
tacttccggcagccgcaggccgaagcagtgatcgaacggctgaaggcggcaggcgtcaac
atgacctacaagggcgtacgggcggaaagcggagccgacctgccgctggccggtaaaacg
attgtcctcaccggcacgctgtccagcatgacccgccaggaagcggaagaagcgataacg
cgcctgggcggcaaagtgacgggcagtgtcagcaaaaagaccgacctggtcattgccggt
gaaaaggcaggctccaaactggaaaaagcggaaaaactgggtgtggccgtcatggacgag
gccggctttttgcagcttttggaagggaacaacaagtag
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