Achromobacter seleniivolatilans: RAS12_15570
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Entry
RAS12_15570 CDS
T09953
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asel
Achromobacter seleniivolatilans
Pathway
asel03030
DNA replication
asel03410
Base excision repair
asel03420
Nucleotide excision repair
asel03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asel00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RAS12_15570 (ligA)
03410 Base excision repair
RAS12_15570 (ligA)
03420 Nucleotide excision repair
RAS12_15570 (ligA)
03430 Mismatch repair
RAS12_15570 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asel03032
]
RAS12_15570 (ligA)
03400 DNA repair and recombination proteins [BR:
asel03400
]
RAS12_15570 (ligA)
Enzymes [BR:
asel01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RAS12_15570 (ligA)
DNA replication proteins [BR:
asel03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RAS12_15570 (ligA)
DNA repair and recombination proteins [BR:
asel03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RAS12_15570 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RAS12_15570 (ligA)
MMR (mismatch excision repair)
DNA ligase
RAS12_15570 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RAS12_15570 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
BRCT_2
Zn_ribbon_NUD
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
WMD18073
UniProt:
A0ABY9LVQ0
LinkDB
All DBs
Position
complement(3453201..3455303)
Genome browser
AA seq
700 aa
AA seq
DB search
MSSASAGENAAQAAARLRAELEQHNVRYYVYDEPSVSDAEYDGLMRELEALEAEHPELVT
PESPTQRVGAAPVSAFGSVRHVVPMLSLNNAFDEEEVVAFDRRVTDTLRGAGLLGPAQQA
DYFCELKLDGLAISLRYEDGRLVQAATRGDGQTGEDVTSNIRTIKAIPLQLKGAAPKVLE
VRGEVLMNRADFEKLNVAQAKRDEKVFVNPRNAAAGSLRQLDPRITAKRPLRFFAYGWGE
VQGLPGTQSGLFDEASAGAAEASELPQKSHGAMLAWLHELGLPVNLMHNHRATGAEGLMA
FYAKVGALRATLPYDIDGVVYKVDSLPAQKVLGFVARAPRFALAHKFAAEEATTTLLDIE
VQVGRTGAITPVARLKPVFVGGVTVTNATLHNEDEIRRKDVRVGDTVIVRRAGDVIPEVL
APVLEKRPDDAREFVMPTACPVCGSAIERLEDETIARCTGGLFCGAQRKQTLWHAASRKA
LDIEGLGEKLVDQLVDSGRVKSLADLYSLRPLELVGLDRMGQKSADNLVAAIEKARSPGL
GRLLFALGIRHVGETTARDVARHFGSIDAIMDADEDALSSVPDVGPVVAASIRRFFAEQH
NRDVIEQLKAQGVNPVAEAVPQGTTLAGKTFVLTGTLPNWTREEASMHIQAAGGKVSGSV
SKKTAYLVAGEEAGSKLTKAQELGVTVLDEDALKALLGMS
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcgcgtctgcgggtgaaaatgcggcccaggccgcagcgcgcttgcgcgccgaa
cttgaacagcacaacgtccgctactacgtctacgacgaaccgtctgtctcggacgccgag
tacgacgggctgatgcgcgagctcgaagccctggaggccgagcatcccgaactcgtgacc
ccggagtcgcccacgcaacgcgtgggtgccgctcccgtgtccgcttttggcagcgtgcgt
catgtggtgcccatgctgtcgttgaataatgcattcgacgaagaagaagtggtggcattt
gaccgccgcgtcactgacacgctgcgcggcgcgggcctgctgggtccggcgcagcaagcc
gattatttctgtgaattgaagctcgacggcctggcgatcagcttgcgctacgaggacggc
cgtctggtgcaggcggccacccggggcgatggccagactggcgaggacgtcacgtccaat
attcgcaccatcaaggccattccgttgcagctcaagggcgctgcgcccaaggtgctggaa
gtgcgcggagaggtgctgatgaatcgcgccgacttcgaaaagctgaacgtggctcaggcc
aagcgggacgagaaggtgttcgtcaatccgcgcaatgccgctgccggcagcctgcgccag
ctggacccgcgcatcaccgccaagcggccgttgcgcttctttgcctatggctggggcgag
gtgcagggcctgcctggcacgcaaagcggtttgtttgacgaagcgtcggcgggcgccgcc
gaggcgtctgagctgccgcagaaatcgcatggcgccatgttggcctggctgcacgaattg
ggcctgccggtgaatctgatgcacaaccatcgggcaaccggcgccgagggcctgatggcg
ttttacgccaaggttggcgctttgcgcgcaacactgccctacgacatcgacggtgtggtc
tacaaggtagattcgctgccggcccaaaaggtgctgggatttgtggcgcgggcgccgcgt
tttgcgctggcgcataaatttgccgccgaagaagccaccacgactttgctggatatcgag
gtgcaggtgggccgcaccggcgccatcacgccggtggcgcgcctgaaaccggtatttgtg
ggcggcgtcaccgttaccaacgccacgctgcacaacgaagacgagattcgccgcaaggat
gtgcgcgtcggcgatacggtcattgtgcggcgcgctggcgacgtgattccggaagtgctg
gccccggtgctggaaaaacgcccggacgatgctcgtgagttcgtgatgccgactgcctgc
ccggtctgcggctccgccatcgaacgcctggaagacgaaaccatcgcgcgttgcacaggc
ggcttgttctgcggcgcacagcgcaagcagaccttatggcacgccgccagccgcaaggcg
cttgatattgaaggcctgggcgaaaagctggtggaccagttggtcgacagcggccgcgtc
aagtcgttggccgacctgtatagcctgcgtccgctggaattggtgggtttggaccgcatg
ggccagaagtctgccgataatctggtggctgcgattgaaaaggcgcggtctccgggcttg
ggtcgattgctgtttgcattgggcatccgtcacgtgggcgagacgaccgcgcgcgacgtt
gctcgccacttcggcagcattgacgcgatcatggacgcagacgaggatgccttgtcgtcg
gtgcccgatgtgggcccggtggttgcggcatcgatacgccgtttttttgccgaacagcac
aatcgcgatgtgatcgagcagctcaaggcgcaaggcgtcaatccggtggctgaagccgtc
ccgcaaggcaccacgctggccggcaagaccttcgtgctgaccggcaccttgcccaactgg
acgcgggaagaggcttccatgcacatccaggcggcaggcggcaaggtcagcggctctgtg
tccaagaagaccgcttatctggtcgcaggcgaagaggccggcagcaagctgaccaaggcg
caggagctgggcgtgaccgtgctggatgaggacgcgctgaaggcattgctgggcatgtcc
tga
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