Actinocatenispora sera: Asera_53100
Help
Entry
Asera_53100 CDS
T07446
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
aser
Actinocatenispora sera
Pathway
aser03030
DNA replication
aser03410
Base excision repair
aser03420
Nucleotide excision repair
aser03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aser00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Asera_53100 (ligA)
03410 Base excision repair
Asera_53100 (ligA)
03420 Nucleotide excision repair
Asera_53100 (ligA)
03430 Mismatch repair
Asera_53100 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aser03032
]
Asera_53100 (ligA)
03400 DNA repair and recombination proteins [BR:
aser03400
]
Asera_53100 (ligA)
Enzymes [BR:
aser01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Asera_53100 (ligA)
DNA replication proteins [BR:
aser03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Asera_53100 (ligA)
DNA repair and recombination proteins [BR:
aser03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Asera_53100 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Asera_53100 (ligA)
MMR (mismatch excision repair)
DNA ligase
Asera_53100 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Asera_53100 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
BCJ31202
UniProt:
A0A810L9D4
LinkDB
All DBs
Position
complement(5613890..5616067)
Genome browser
AA seq
725 aa
AA seq
DB search
MSTSGNELYATPTAEQVAAAGAEPTAAARQRHREISEQIDDHQYRYYVLDAPTVSDAEYD
RLMRELERLEDEFPALRTPNSPTQRVGGTYSTQFTAVEHVERMLSLSNAVTAEELTAWAN
RVEREAGGARVSYLCELKVDGLAVDLVYRGGRLVRGATRGDGRTGEDITPNVRTVDGIPD
ELTGSDEFPVPALVEVRGEIYFPVERFTELNASLVEQGKPPFANPRNAAAGSLRQKDPRI
TAQRPLRLIVHGLGAREGFEPARQSEAYAALQAWGLPTSTRWRVVSSLSDVQDYIAYYGK
HRHQVEHEIDGVVVKVDEVSVQRRLGATSKAPRWAIAYKYPPEEVNTKLTDIQVSVGRTG
RVTPYAVLEPVRVAGSTVTFATLHNASEVKRKGVLIGDTVVVRKAGDVIPEVVGPVADLR
PADAREFVMPSRCPECDTPLRPEKEGDADIRCPNARYCPAQRRERVFHLAGPESFDIEAL
GYKAATALLDDGVIVDEGDLFGLDAKQLAASPFFVNKDGTLGSNAQALLEHLAAAKSTPL
WRVLVGLSIRRVGPVAARALAREFSSIERIANADRAELAAADGVGPAIAEAVHDWFTVDW
HREIIDKWRAAGVRMAEEHADDEPRPLAGSTIVVTGSLAAYSRDEAIEEIQSRGGKVTGS
VSRKTDFVVVGENPGSKYDKAVALKVPVLDEDGFAVLLSDGPEAAAERAQVGPAEDTTGS
GVDAE
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaccagcggtaacgagctgtacgccacgccgaccgccgagcaggtggccgctgcc
ggcgcggagccgaccgcggcggcccggcagcggcatcgggagatctccgagcagatcgac
gaccaccagtaccgctactacgtgctcgacgcgccgacggtctcggacgcggagtacgac
cggctgatgcgcgagctggagcggctggaggacgagttcccggcgctgcgcacgccgaac
tcgcccacccagcgggtcggcggtacctactcgacccagttcaccgcggtcgagcacgtc
gagcggatgctcagcctgagcaatgccgtcaccgcggaggagttgaccgcgtgggcgaat
cgggtcgagcgggaggccggcggcgcgcgggtctcctacctgtgcgagctgaaggtcgac
gggctggccgtcgacctggtctaccggggcgggcggctggtgcgcggcgcgacccgaggc
gacggccgcaccggcgaggacatcacccccaacgtgcgcaccgtcgacggcatcccggac
gaactgaccggttccgacgagttcccggtcccggcgctggtggaggtgcgtggcgagatc
tacttcccggtcgagaggttcaccgagctcaacgcgtcgctggtggagcagggcaagccg
ccgttcgccaacccgcgcaacgccgccgccggcagcctgcggcagaaggacccgcggatc
accgcgcagcggccgctgcggctgatcgtgcacgggctcggcgcccgggaggggttcgag
ccggcccggcagtccgaggcgtacgcggcgctgcaggcgtgggggctgccgacctcgacg
cggtggcgggtggtgtcgtcgctgtccgacgtccaggactacatcgcctactacggcaag
caccggcaccaggtcgagcacgagatcgacggtgtcgtggtgaaggtcgacgaggtgagc
gtgcagcgccggctcggcgccaccagcaaggcgccccggtgggccatcgcctacaagtac
ccgcccgaagaggtcaacaccaagctgaccgacatccaggtcagcgtgggtcgcaccggc
cgggtcacgccctacgcggtgctcgaaccggtccgggtggccggctcgaccgtcacgttc
gccaccctgcacaacgcctccgaggtgaagcgcaagggggtgctgatcggcgacaccgtc
gtggtgcgcaaggccggtgacgtgatcccggaggtggtcggtccggtcgccgacctgcgg
cccgccgacgcgcgcgagttcgtcatgccgagccgctgcccggagtgcgacaccccgttg
cgtccggagaaggagggcgacgccgacattcgctgcccgaacgcccggtactgcccggcg
cagcgccgggaacgcgtcttccacctggccggacccgaatcgttcgacatcgaggcgctg
gggtacaaggcggccaccgcgctgctggacgacggcgtcatcgtcgacgagggcgacctg
ttcgggctcgacgcgaagcaactcgccgcctcgcccttcttcgtcaacaaggacggcacc
ctcggtagcaacgcccaggcactgctcgaacatctggccgcggcgaagtccacgccgctg
tggcgggtgctcgtgggcctgtccatccggcgtgtcgggcccgtcgcggcacgggcattg
gcccgcgagttctcctccatcgagcgcatcgcgaacgccgaccgggccgagctggccgcc
gcggacggcgtggggccggcgatcgccgaggcggtccacgactggttcacggtcgactgg
caccgcgagatcatcgacaagtggcgcgccgccggggtccggatggcggaggaacacgcc
gacgacgagccacggccgctggccgggtcgacgatcgtggtgaccggctcgctcgccgct
tactcccgggacgaggcgatcgaggagatccagtcccgcggcggcaaggtgaccggctcg
gtgtccaggaagaccgacttcgtggtggtcggcgagaacccgggcagcaagtacgacaag
gcggtggcgctgaaggtgccggtgctggacgaggacggcttcgcggtgctgctgtccgac
ggtccggaagccgcggccgaacgcgcccaggtcggcccggcggaggacaccaccggctcg
ggcgtcgacgcagagtga
DBGET
integrated database retrieval system
