Candidatus Arthromitus sp. SFB-mouse-Japan: SFBM_1075
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Entry
SFBM_1075 CDS
T01591
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asf
Candidatus Arthromitus sp. SFB-mouse-Japan
Pathway
asf03030
DNA replication
asf03410
Base excision repair
asf03420
Nucleotide excision repair
asf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SFBM_1075
03410 Base excision repair
SFBM_1075
03420 Nucleotide excision repair
SFBM_1075
03430 Mismatch repair
SFBM_1075
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asf03032
]
SFBM_1075
03400 DNA repair and recombination proteins [BR:
asf03400
]
SFBM_1075
Enzymes [BR:
asf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SFBM_1075
DNA replication proteins [BR:
asf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SFBM_1075
DNA repair and recombination proteins [BR:
asf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SFBM_1075
NER (nucleotide excision repair)
GGR (global genome repair) factors
SFBM_1075
MMR (mismatch excision repair)
DNA ligase
SFBM_1075
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SFBM_1075
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
PTCB-BRCT
RNA_ligase
HHH_5
DNA_ligase_ZBD
BRCT_2
Nlig-Ia
OB_DPOA2
5_3_exonuc
RNA_lig_T4_1
DUF7500
Zn_ribbon_PF0610
Motif
Other DBs
NCBI-ProteinID:
BAK56839
LinkDB
All DBs
Position
complement(1155579..1157558)
Genome browser
AA seq
659 aa
AA seq
DB search
MKNKIERIHELVLYLNESSYAYYVLDDPKIEDSEYDKLYDELRELENETKYILKNSPTQR
VGDVVLDKFEKSVHKAKMWSLDKVTSFESLELWHNKNLKASNENNLGSPSYIVVQKFDGV
SINLIYENGEFIKASTRGNGEIGENVTEQAKTIKSIPLSINDMGSFEIRGEVIMTKEEFE
KYNRVANIPLKNLRNGASGALRNLDVNETKKRKLDTFIYDVAYYDEGKFSTYFEILNFLK
DNKFKHPEFKLCKTLDEVKEEIKRIESLKDNLNYDIDGVVVSVNELDLRSILGYTVKHPK
FSIAYKFEAEEVMTKLIGVEWNVGRSGRVSPTAILEPTDVSGITIKRATLNNIDDIVRKN
VKLNCDVLIRRSNDVIPEIIKGLGREGLEEIEIPTICPSCKSPLSRDGVHLYCTNTISCR
PQIVKSIVHFASRDAMNIEGFSEKLADQFYEKLCVKRISNLYEITFDDLLTLDKVKEKKA
NNILRSIEKSKECNLYNFIYALGIKNVGLKTSKDIVKEYKTLDRIMSVTREELDKIYGIG
DVILDDIFKFLNNEGVREEIRRLIELGVKFKYEEEVEVQDNLFNGKIVVVTGTIKNLSRK
DIKELLEKLGARISESVSKKTDYVIFGENAGSKLSKAKSLNLNMISEDEFNEIIEKIGI
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaataaaatagagaggatacatgaacttgttttatatttaaatgaaagttcctat
gcgtactatgtgcttgatgatcctaaaattgaggatagtgaatatgataagctctatgat
gaactcagagaacttgaaaatgaaactaagtatattttaaaaaattctcccacgcaaaga
gtaggagatgttgttctagataaatttgaaaagtcagtacataaagcaaaaatgtggagt
cttgataaggttacatcatttgaaagtttggagctttggcacaataagaaccttaaggca
tcaaatgaaaataatttggggagtccttcttatatagttgtacaaaaatttgatggggta
agtataaatcttatttatgaaaatggagaatttataaaggcgtctacgagaggaaatggt
gaaatcggagaaaatgtaactgaacaagcgaaaactataaaaagtattccattatcaata
aatgatatggggtcttttgagattcgtggagaagttattatgacaaaagaagagtttgaa
aaatacaatagggttgctaatatacctcttaagaatttaagaaatggtgcatcaggagct
ttgaggaatttagacgttaatgaaacaaagaaaaggaaattagatacatttatttatgat
gttgcttattatgatgaggggaaattttctacatattttgagatactaaactttttaaag
gacaataagtttaagcatcctgaatttaaattatgtaagactcttgatgaggtaaaggaa
gaaataaaaaggattgagtctttgaaggataatctaaattatgatattgatggtgttgta
gtttccgtaaatgaattggatcttcgaagtatacttggatatacagttaagcatccgaaa
ttttctatagcgtacaagtttgaggctgaagaggttatgactaagcttattggagttgaa
tggaatgttggacgtagtgggagggtttcgcccactgccatacttgagcctactgatgtt
tctggaatcacaataaagcgtgcaaccttgaataatatagatgatattgtaaggaaaaat
gtaaaacttaattgtgatgtattaataagaagatcaaatgatgttattccagagattatt
aaaggattaggcagagaaggtttggaggaaatagaaataccaacgatttgtccgtcttgt
aaatctcctcttagtcgtgatggagttcatctttattgtacgaatactatttcttgtaga
cctcaaattgttaaatctattgttcattttgcctcaagagatgcaatgaatattgaagga
tttagtgagaaacttgctgatcaattttatgagaaattgtgtgttaaaagaatttcaaat
ctttatgaaataacatttgatgatctattgactcttgataaagttaaagagaagaaagca
aataatattttaagatcgattgagaagagtaaggaatgtaatttatataattttatttat
gcacttgggattaaaaatgttgggcttaaaacttcaaaagatatagttaaggaatataag
acacttgatagaataatgagtgtaacaagagaagagctagataaaatatatggaattggt
gatgttattttggatgacatatttaaatttttaaataatgagggagttagagaagaaatt
agaaggctaattgagcttggagttaaatttaaatatgaggaagaagttgaagttcaagat
aatttatttaatgggaaaatagttgttgttacaggaacgattaaaaatttatctagaaaa
gatattaaagaacttttggagaaattaggtgcgagaatttcagaatctgttagtaagaaa
actgattatgtaatttttggtgagaatgcgggaagtaaattatctaaagcaaaatcatta
aatttaaatatgatttctgaagatgaatttaatgagatcattgaaaaaataggaatataa
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