Actinotignum schaalii: FB03_08910
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Entry
FB03_08910 CDS
T03214
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asg
Actinotignum schaalii
Pathway
asg03030
DNA replication
asg03410
Base excision repair
asg03420
Nucleotide excision repair
asg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FB03_08910
03410 Base excision repair
FB03_08910
03420 Nucleotide excision repair
FB03_08910
03430 Mismatch repair
FB03_08910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asg03032
]
FB03_08910
03400 DNA repair and recombination proteins [BR:
asg03400
]
FB03_08910
Enzymes [BR:
asg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FB03_08910
DNA replication proteins [BR:
asg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FB03_08910
DNA repair and recombination proteins [BR:
asg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FB03_08910
NER (nucleotide excision repair)
GGR (global genome repair) factors
FB03_08910
MMR (mismatch excision repair)
DNA ligase
FB03_08910
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FB03_08910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
KOW6_SPT51-2
SctB2
DUF7501
Motif
Other DBs
NCBI-ProteinID:
AIE83329
LinkDB
All DBs
Position
2093016..2095598
Genome browser
AA seq
860 aa
AA seq
DB search
MSIDEARRRWNEIAPTLTRAQIAYHSGADPLMTDDHYDRLIHELRDLEARYPELAAPDSP
SRAVGAPVQNDGAATLAAGALADKGAEPEHGAGAELGAEPTLGGVPVPDAQPFAPVRHRE
RLYSLQDVFSLEDLRAWYAALPGVAGESGTAVTAEAKIDGLAINLRYDNGALTVAATRGD
GVTGEDVTRNIATIAAIPQRLRGSDIPDVMEVRGEVFFPLADFAQFNAEQRQRREAAERE
RAAAEQIGDTAAVREANRIIRSCREFANPRNAAAGSLRQKDPAVTASRPLSFIAHGIGAL
AGVPASLAEALSTQAGVYEAFARWGLPISPYTKLVSNWEDIEAFVADLATHRYDLIHGID
GAVLKVNNRAAQGGLGYTSRVPRWAIAYKYPPEEVETTLLDIQVNVGRTGRATPYAIMEP
VLVDGSVVTQATLHNREEVARKGVRIGDVVIVRKAGDVIPEVVGPVLLERDGTEREWVMP
RACPSCGATLAPAQEGDVDMRCPNAQSCPAQLAERVVHIGSRGALDVEALGEETALWLTN
PDARRREALIALASGHRLEIEGADGRKKTLRLAREAARDLGIVDGDGAILDSEVIIPPAV
ARSLGVPEPQEPVLHSEAGLFAVQAADVATTWVWKEIRNAGQPTGDYRYVRAAWTKPTWG
SSAGQRVITKESEPGKALLTMLTELEKARGKELWRKLVALSIRHVGPTAARALAAAFPDL
AQLRAASVEELSAVDGVGEIIARSFKEWFEVPWHLDIIERWEAAGVVFADDTAAAEQVPQ
TLAGMTIVATGSLEGYTRDSVKEAILAHGGKAAGSVSKKTTAVVVGENAGSKAAKAEELG
IPRLSEAEFTELLRTGQLPA
NT seq
2583 nt
NT seq
+upstream
nt +downstream
nt
atgagcattgacgaggcccgccgccgttggaatgagattgcccccacgctaacccgcgcg
cagatcgcctaccattccggggccgatccgctcatgacggatgaccactacgaccgcctc
attcacgagctgcgcgatctggaagcacgctacccggagctcgcggcaccggattccccc
agccgcgccgtcggggcaccggtgcagaacgacggcgcagccaccctggctgcgggtgcc
ctggcggataaaggtgctgaaccggagcacggcgccggagcggagcttggcgccgaacct
acgcttggcggtgtgcctgtgcccgatgctcaacccttcgcgccggtacggcaccgcgaa
cgcctctactccctccaggacgtcttttcgctcgaggatctgcgcgcctggtacgccgcg
ctcccgggagtagctggggaatccggcaccgccgtcaccgcggaagcaaaaatcgacggc
ctcgcgatcaacctgcgctacgacaacggcgcgctcaccgtggccgccacccgcggggac
ggcgtgaccggggaagatgtcacccgcaatatcgccaccatcgccgccattccgcagcgc
ctgcgcggcagcgatattccggacgttatggaagtacgcggggaagtattcttccccctc
gccgacttcgcccaattcaacgccgaacagcgccagcgccgcgaagcagccgaacgcgag
cgcgcggccgcggaacagatcggggataccgcagcggtgcgcgaagccaaccgcatcatc
cgctcctgccgcgaattcgccaacccgcgtaatgccgcggccggttcgctgcgtcaaaaa
gacccggccgttaccgcctcccgcccgctctcctttattgcccacggcatcggggcgctc
gcgggcgtgccggcctccctggccgaagcactctccacccaggccggcgtctacgaagca
ttcgcacgctggggcctgcccatttccccctacaccaaactggtctctaactgggaggat
atcgaggctttcgtggcagacctggccacccaccgctacgatctcatccacggaattgac
ggcgccgtcctcaaagtcaataaccgcgcggcgcagggcgggctcggttacacttctcgc
gtcccgcgctgggccatcgcctataaatacccgcccgaagaagtggaaaccaccctcctg
gatatccaggtcaatgtgggccgcaccgggcgcgccaccccctacgccattatggaaccc
gtgctcgtagacggctcggtcgttacccaagccaccctccacaaccgtgaagaagtagcc
cgcaaaggcgtgcgcatcggcgacgtcgtgatcgtgcgcaaagccggggatgttatcccc
gaagtggtcggcccggtcctcctcgagcgcgacggtaccgaacgcgaatgggtcatgccg
cgcgcctgcccctcctgcggggccacactcgcccccgcccaggaaggtgatgtggatatg
cgctgccccaatgcgcaatcctgccccgcccaactggccgaacgcgtggtccatatcggc
tcacgcggggcactggacgtggaagccctcggcgaagaaaccgccctctggctcaccaac
ccggacgcccggcgccgcgaagcactcatcgcgctcgccagcggccaccgtctagaaatc
gaaggtgcggacgggcgcaaaaaaaccctgcgcctcgcgcgcgaagcggcacgcgacctg
ggcattgtggacggcgacggcgccatcctcgactccgaggtgattatcccgcccgcagtg
gctcgcagcctgggcgttcccgaacctcaagaaccggtgctccacagcgaagccggactt
ttcgcggtacaagccgcggacgtagccaccacctgggtgtggaaagaaatccgaaacgcc
ggccaacccaccggcgactaccgctacgtgcgcgccgcctggactaaacccacgtgggga
agcagcgccggccagcgcgtcatcaccaaagaaagcgaacccggcaaagccctcctcacc
atgctcaccgagctcgaaaaagcccgcggcaaagaactttggcgcaaactcgtggccctc
tccatccggcacgtcggccccaccgcggcccgcgcgctcgcggcggcgttcccggatctg
gcgcagctgcgcgccgcttccgtggaagaactctccgcggttgacggcgtgggggagatt
atcgcccgctcctttaaagaatggttcgaggtgccctggcatctggacattattgaacgg
tgggaagccgccggggtagttttcgccgatgataccgcggccgcggagcaggtcccccaa
accctggcgggcatgaccattgtggccaccggctccctggaaggctacacccgcgattcg
gtcaaggaagcgatcctcgcgcacggcgggaaagcggccggttcggtttccaagaaaacc
accgcggtggtggtgggggagaatgccgggtcgaaggccgccaaggccgaagaactcggt
attccgcgcctgagcgaagcggaattcaccgagctgctgcgcaccggccagctgcccgca
taa
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