Alistipes shahii: AL1_02900
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Entry
AL1_02900 CDS
T02578
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ash
Alistipes shahii
Pathway
ash03030
DNA replication
ash03410
Base excision repair
ash03420
Nucleotide excision repair
ash03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ash00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AL1_02900
03410 Base excision repair
AL1_02900
03420 Nucleotide excision repair
AL1_02900
03430 Mismatch repair
AL1_02900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ash03032
]
AL1_02900
03400 DNA repair and recombination proteins [BR:
ash03400
]
AL1_02900
Enzymes [BR:
ash01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AL1_02900
DNA replication proteins [BR:
ash03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AL1_02900
DNA repair and recombination proteins [BR:
ash03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AL1_02900
NER (nucleotide excision repair)
GGR (global genome repair) factors
AL1_02900
MMR (mismatch excision repair)
DNA ligase
AL1_02900
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AL1_02900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
Auto_anti-p27
HHH
BRCT_2
PTCB-BRCT
Prok-RING_1
Zn_Ribbon_TF
Motif
Other DBs
NCBI-ProteinID:
CBK62978
UniProt:
D4IJ66
LinkDB
All DBs
Position
complement(338733..340757)
Genome browser
AA seq
674 aa
AA seq
DB search
MVRERIEELRRQLELHNFKYYVENAPEISDFEFDAMMRELQDLERAHPEYADPNSPSVRV
GSDLTAEFRTVKHRYAMLSLGNTYSLDELHEFIGRIEREAGATDYVCELKFDGTAISLTY
EHGRLVRAVTRGDGVEGDDVTANVRTVRTVPLRLRGTDWPDLFEIRGEILMPYASFDRLN
AEREANGEQLFANPRNAAAGTLKQQSSAVVARRGLDCTLYQLAGDELPFTSHWESLEKAR
QWGFKVSDAARICRSVAEIDAFIEHWDTARRRLPFPTDGVVIKVNDFAVRRQLGFTAKAP
KWAVAYKFKAERAATRLDSVSFQVGRTGAITPVANLEPVLLAGTTVRRATLHNAEQMAQL
DIRPGDTVYVEKGGEIIPKIIGVDLAQRPADSRPFEYITVCPECGTPLVRYEGEAKHYCP
NQSGCRPQIIGRIIHFIRRKALDIEGLGEETVELLYENGLVRDVADLYDLRAEQLAPLPR
LGEKSADNIIRSVERSKAVPFQRVLFGLGIRFVGETTAKYLAEHFRSLDAVMRATREELV
EADEVGGRIADAIIEYFAEEDNLRIIRRLRAAGLQFEAEARRLASEALAGRSFVVSGKFT
RSRDEMKELIELHGGRNLAAVSGSVDYLVAGDKMGPAKLKKAEKLGVRIISEEEFIAMIE
GGGPVEKAAQQELF
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggtacgcgaacggatcgaggagctgcgccggcagctcgaactgcataacttcaaatat
tacgtcgaaaacgcccccgagatttcggatttcgagttcgacgcaatgatgcgcgaactt
caggatctggagcgcgcacaccccgaatacgccgaccccaactcgccttcggtgcgcgtg
ggaagcgacctgacggccgagttccggaccgtgaagcaccgctacgcgatgctgtcgctg
ggcaacacctactcgctggacgaactgcacgagttcatcggccgcatcgagcgcgaagcc
ggggccacggactacgtctgcgaactgaaattcgacggcacggccatctcgctcacctac
gagcacggacggctcgtgcgcgccgtgacccgcggcgacggcgtcgagggcgacgacgtg
acggccaatgtccgcaccgtgcgcacggtgcccctgcgcctgcggggcacggactggccc
gacctcttcgaaatccgcggcgagatcctgatgccctacgcctcgttcgaccgcctcaac
gccgagcgcgaggccaacggcgagcagctcttcgccaacccccgcaacgccgccgccggg
acgctcaagcagcagtcgtcggccgtggtggcccggcgcggactggactgcacgctctac
cagctggcgggcgacgagctgcccttcacgagccattgggagagcctcgaaaaggcccgc
cagtgggggttcaaggtctcggacgcggcgcgcatctgccgcagcgtcgccgagatcgac
gcatttatcgaacactgggacaccgcacggcgccgcctgcccttcccgacggacggcgtg
gtgatcaaggtcaacgacttcgccgtccggcgccagctgggattcacagccaaggccccc
aagtgggccgtggcctacaagttcaaggccgaacgggccgccacgcggctcgacagcgtg
tcgttccaggtaggacgcaccggggctatcacgcccgtcgccaacctcgaaccggtgctg
ctggccggaaccaccgtgcggcgcgcgacgctgcacaacgccgagcagatggcccagctg
gacatccgcccgggcgacacggtctacgtcgagaagggcggcgagatcatcccgaagatc
atcggcgtggacctcgcgcagcgcccggccgacagccgtccgttcgagtacatcaccgta
tgccccgaatgcgggacgccgctggtgcgctacgaaggcgaggccaagcactactgcccc
aaccagagcggatgccggccccagatcatcgggcgcatcatccacttcatccgccgcaag
gccctcgacatcgaggggctgggcgaggagaccgtcgaactgctctacgaaaacggactc
gtgcgcgacgtggcggacctctacgacctgcgggccgaacaactggcccccctgccccgg
ctgggcgagaagtcggccgacaacatcatccgctcggtggaacgctcgaaggcggttccc
ttccagcgcgtgctgttcgggctgggaatccgcttcgtgggcgagaccacggccaaatac
ctcgccgagcatttccgctcgctggacgccgtgatgcgggccacgcgcgaggagctggtc
gaggccgacgaggtgggcggacgcatcgccgacgccatcatcgaatacttcgccgaggag
gacaacctgcggatcatccgccgcctgcgcgccgcggggctgcaattcgaagccgaggcg
cgccgcctggcgtcggaggcgctggcgggccggagtttcgtggtctcgggcaagttcacg
cggagccgcgacgaaatgaaggagctgatcgaactgcacggaggccggaacctcgcggcg
gtgtcgggcagcgtcgactacctcgtggcgggcgacaagatgggcccggcgaagctgaag
aaggccgagaagctgggcgtaaggatcatctccgaggaggagttcatcgccatgatcgaa
ggcggaggcccggtggaaaaggccgcacaacaggaattattctga
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integrated database retrieval system
