Acinetobacter shaoyimingii: G8E00_12830
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Entry
G8E00_12830 CDS
T07106
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asha
Acinetobacter shaoyimingii
Pathway
asha03030
DNA replication
asha03410
Base excision repair
asha03420
Nucleotide excision repair
asha03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
G8E00_12830 (ligA)
03410 Base excision repair
G8E00_12830 (ligA)
03420 Nucleotide excision repair
G8E00_12830 (ligA)
03430 Mismatch repair
G8E00_12830 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asha03032
]
G8E00_12830 (ligA)
03400 DNA repair and recombination proteins [BR:
asha03400
]
G8E00_12830 (ligA)
Enzymes [BR:
asha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
G8E00_12830 (ligA)
DNA replication proteins [BR:
asha03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
G8E00_12830 (ligA)
DNA repair and recombination proteins [BR:
asha03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
G8E00_12830 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
G8E00_12830 (ligA)
MMR (mismatch excision repair)
DNA ligase
G8E00_12830 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
G8E00_12830 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
QIO06763
UniProt:
A0A6G8RYF2
LinkDB
All DBs
Position
complement(2843747..2845780)
Genome browser
AA seq
677 aa
AA seq
DB search
MDQTAVVAQMRQLIQLLAQHNHAYYVMDQPTIEDSEYDQLFHQLKALEQQYPDLVQADTP
TNKVGGKALSKFETLTHKVPMLSLGNVFNKEDLFDFARRVEERLPNQKIQYDVELKFDGL
AISLWYEHGVLVRGVTRGDGETGEVITQNVKTIRNLPKVLSSSQGPVPELLEVRGEVLMP
KAGFEKLNAENEAKGEKTFANPRNAAAGSLRQLDPKIAASRPLAFYAYGIAQCEPHHGQT
TMSGSLEWLTQFGFAVGERHFVCDSIDDVQKAYEEINAERPDLSVEIDGMVIKVDDLKQQ
KQLGFLSREPRWATAYKFPAVAALTTVDNIDWQVGRTGTLTPVARLNPVAVGGVTVSNVT
LHNIGEIHRLDVRIGDTVSVYRSGDVIPKVEKVWPEFRPVDSVEVHLPENCPVCDSPVVM
PEGEALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWAESLLHLDLLKDVADIYHL
HEHREKLLTIEKMGEKSVQNLIDSIENSKKTTLASFIYALGIRGVGETTARMLANTFQTL
EALRNADLEALKKTPDVGDITAEWILDFFQAPHNLEVLDRLLAAGIHWDAPIAPTRQPLN
GESWVVTGTLSSMGRDEATQMLQALGARVSGSVSSKTKCLVAGEKAGSKLDKAEKLGVPI
LNEQEFLALMAEYGQTI
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atggatcaaactgctgtggttgcgcaaatgcgtcaactgattcaactgctggctcaacat
aatcatgcgtattatgtgatggatcaacccacgattgaagacagcgaatatgatcagttg
tttcatcagctaaaggctttagaacaacaatatcctgaccttgtccaagccgataccccg
accaataaagtcggtggaaaagctttatctaaatttgaaactctgacgcataaagtacct
atgttgtcactgggcaatgtatttaataaagaagatttattcgattttgcacgccgtgta
gaagaacgtttacccaatcaaaagattcaatatgatgttgaactcaagttcgatggtcta
gcgatttcactgtggtatgaacatggcgttctcgttcgtggtgtgacacgtggtgatggt
gaaacgggtgaagtgattacccaaaatgtcaaaaccatccgaaatttgccaaaagtattg
tcatcaagtcaaggtccagtgcctgagcttttagaggttcgtggtgaagtcctgatgcca
aaagcgggcttcgaaaaactaaatgctgaaaatgaagccaagggtgaaaaaacatttgcc
aatccgcgtaatgcggcagcaggtagtttacgtcagcttgatccaaaaattgcagcatca
cgtccactagcattctatgcgtatggtattgcacagtgtgagccacatcatgggcaaacc
accatgtcaggtagtttggaatggttgacgcagtttggttttgctgtaggtgaacgccat
tttgtttgtgacagtattgacgatgtgcaaaaagcctatgaagaaattaatgcagagcgt
ccagatttaagcgttgaaattgatggcatggtcattaaagttgacgatctcaaacagcaa
aaacagttgggttttttgagccgtgaaccacgttgggcaacagcatataaatttcctgca
gtggcagcacttacgactgtcgataacatcgattggcaagtcggacgtacaggaacatta
acccctgtagcacgtttaaatcctgttgctgttggtggtgtgactgtttccaatgtgact
ttacataatattggtgaaatccatcgtttagatgtccgcattggcgacacggtgagtgtt
tatcgtagcggagatgtgattcctaaggttgaaaaagtttggcctgaatttcgccctgtg
gatagcgtcgaagttcatctgccagaaaactgtccagtatgtgattcaccagtggttatg
cctgaaggtgaagcattggcacgttgctcaggcggtttatattgcgctgcacaacgtatt
gaagcaattcgccattttgtttctcgtaaagccatggatattgaaggcttaggtgatcgt
tgggctgagtctttattgcacttagatttgctcaaagatgtggctgatatttatcatttg
catgagcatcgtgaaaaattactgaccattgaaaagatgggtgagaaatctgttcagaac
ctgattgattccattgaaaacagtaagaaaacaacgcttgcatcctttatttatgcctta
ggaattcgtggtgtaggtgaaaccacagctcgtatgcttgccaatactttccagacgtta
gaggcgttacgtaacgcagaccttgaagcattgaagaaaaccccagatgtgggtgatatt
actgctgaatggattttggatttcttccaagcaccgcataatttggaagtgttggatcgt
ctacttgctgctggtattcattgggatgcaccaattgcacctacacgtcagcctttaaat
ggtgaaagttgggtggtgacaggcactttaagttctatggggcgtgatgaagcaactcaa
atgttgcaagcgttgggtgcacgtgtgagtggcagtgtctctagtaaaaccaaatgttta
gtggcaggtgaaaaagcaggctctaaacttgataaagctgagaagttaggtgttccaata
ttaaatgaacaagagtttttggctttgatggctgaatatgggcagaccatctaa
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