Actinoplanes sichuanensis: Q0Z83_098520
Help
Entry
Q0Z83_098520 CDS
T09497
Symbol
ligA_2
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asic
Actinoplanes sichuanensis
Pathway
asic03030
DNA replication
asic03410
Base excision repair
asic03420
Nucleotide excision repair
asic03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Q0Z83_098520 (ligA_2)
03410 Base excision repair
Q0Z83_098520 (ligA_2)
03420 Nucleotide excision repair
Q0Z83_098520 (ligA_2)
03430 Mismatch repair
Q0Z83_098520 (ligA_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asic03032
]
Q0Z83_098520 (ligA_2)
03400 DNA repair and recombination proteins [BR:
asic03400
]
Q0Z83_098520 (ligA_2)
Enzymes [BR:
asic01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Q0Z83_098520 (ligA_2)
DNA replication proteins [BR:
asic03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Q0Z83_098520 (ligA_2)
DNA repair and recombination proteins [BR:
asic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Q0Z83_098520 (ligA_2)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Q0Z83_098520 (ligA_2)
MMR (mismatch excision repair)
DNA ligase
Q0Z83_098520 (ligA_2)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Q0Z83_098520 (ligA_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BEL11661
LinkDB
All DBs
Position
10603994..10606261
Genome browser
AA seq
755 aa
AA seq
DB search
MATPEASSRHAELADEIREHQHRYYQLDAPTVSDAEFDLLLRELEALEAEFPELRTPESP
TQTVGGTVSGDFPKVEHAERMMSLDNVFSLDELTTWAERAVRDAGGAVRFLCELKIDGLA
INLTYEKGVLVRAATRGTGRVGDDVTPNVRTIGDIPERLTGDDVPDLVEVRGEIYFPAEA
FAALNAMLVEQGKPTYMNPRNAASGSLRQKDPRVTGARGLGMVVHGLGAREGFTPASQSE
AYAAMKAWGLPVSSRWRLVDDLAGVREFIDYYGKHRHDVEHDIDGVVVKIDEVAIQGRLG
STSRAPRWAIAFKYPPEEVTTKLVDIKVNVGRTGRVTPYAVVEPVVVAGSEVEFATLHNA
QEVVRKGVLIGDTVVLRKAGDVIPEILGPVLELRPADARAFVMPAECPDCGTPLAPAKEG
DIDIRCPNSRYCLGQRRERLTYVGQRNVLDIDVLGEKSARALIDSGVIFDEGDLFHLTEE
DLLRAPFFVKKDGTLGANAAKMLAGLAEAKSRPLARILRGLSIRHVGPDAAGALALEFGS
MAAIEEVIERTSADTATGDPAPGLAGSASADADLSEETDLKSGAATDEGVVEETTTKRRT
AKIVDPLAEVEGVGPTIAQSLREWFAVDWHREIVQKWRAAGVVMADERVETGPRTLDGLT
VVVTGTLAGYTRDKAAEEITSRGGKVSGSVSKKTGFVVVGENPGSKYDKAMALKVPVLDE
AGFGVLLAEGPEAARAVAESSPDAESAGVEATPEG
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
gtggctacacccgaggcatcatcccggcatgccgagctggccgacgagatccgcgagcac
cagcaccgctactaccagctcgacgcgcccacggtgtcggatgccgagttcgacctgctg
ctgcgcgagctggaggcgctggaggcggagttccccgagctgcgcacccccgagtcaccg
acccagaccgtcggcggcacggtctccggcgacttccccaaggtcgagcacgccgagcgc
atgatgtcgctggacaacgtgttcagcctcgacgagctgaccacgtgggccgagcgggcg
gtgcgtgacgccggtggggcggtgcggttcctctgcgagctcaagatcgacggactggcg
atcaatctgacgtatgagaagggcgtgctcgtccgtgccgccactcggggcaccgggcgg
gtcggcgacgacgtgacgcccaacgtgcggaccatcggtgacatcccggagcggctgacc
ggcgacgacgtgcccgacctggtcgaggttcggggcgagatctacttcccggcggaggcg
ttcgcggcgctcaacgcgatgctcgtcgagcaaggcaaaccgacgtatatgaacccgcgc
aacgccgcgtccggcagcctgcggcagaaggatccacgggtcaccggcgcgcgtgggctg
ggcatggtggtgcacggtctcggcgcgcgcgagggcttcacgcccgcctcccagtcggag
gcctacgcggcgatgaaggcgtgggggctgccggtcagctcccggtggcggctcgtcgac
gacctggccggggtgcgcgagttcatcgactactacggcaagcaccgacacgacgtcgag
cacgacatcgacggcgtggtggtgaagatcgacgaggtggcgatccaggggcggctgggc
tcgacgagtcgggcgccgcgctgggcgatcgccttcaagtacccgcccgaggaggtcacc
accaagctggtcgacatcaaggtcaacgtggggcgcaccggccgggtcaccccctatgcc
gtggtcgagccggtcgtggtggccgggtccgaggtcgagttcgccaccctgcacaacgcg
caggaggtggtccgcaagggtgtgctgatcggcgacaccgtggtgctgcgcaaggccgga
gacgtcatcccggagatcctcggcccggtgctggagttgcggccggccgacgcgcgggcg
ttcgtgatgccggccgagtgccccgactgcggcaccccgctggcgccggccaaagagggc
gacatcgacatcaggtgccccaattcgcggtattgcctggggcagcgccgggagcggctg
acctatgtcggtcagcgcaacgtgctcgacatcgacgtgctgggggagaaatcggcgcgg
gcgctgatcgactccggggtgatcttcgacgagggtgacctgttccacctcaccgaggag
gacctgctgcgggcaccgttcttcgtgaagaaggacggcacgctcggcgccaacgccgcc
aagatgctggccggcctggccgaggccaagtcgcggccgctcgcccggatcctgcgtggg
ctgtcgatccggcatgtcgggccggatgcggcgggggcgctggcgctggagttcggctcg
atggcggcgatcgaggaggtcatcgagaggacgtcggcggacaccgccacgggtgatccg
gcgccgggtcttgcgggctcggcatcggctgacgccgacctgtcggaggagacggacctc
aagtccggtgcggcgaccgacgagggggtcgtcgaggagaccacgaccaaacggcgaacc
gccaagatcgtcgacccgctcgccgaggtcgagggggtcgggccgaccatcgcgcagagt
ctgcgggagtggttcgccgtcgactggcaccgcgagatcgtccagaagtggcgggcggcc
ggcgtggtgatggccgacgagcgggtcgagaccggcccgcgcacgctggacggcctgacc
gtggtggtgaccggcacgctggccggctacacccgggacaaggcggccgaggagatcacc
tcccggggcggcaaggtcagcggctcggtgtcgaagaagaccgggttcgtggtggtcggc
gagaacccgggcagcaagtacgacaaggcgatggccctcaaggtgccggtgctcgacgag
gccggattcggggtgcttctcgccgagggtccggaggcggcccgtgcggtcgccgagagc
tctccggatgcggagagcgcgggcgtcgaggccaccccggaagggtga
DBGET
integrated database retrieval system
