Acinetobacter schindleri: AsACE_CH00642
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Entry
AsACE_CH00642 CDS
T04787
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asj
Acinetobacter schindleri
Pathway
asj03030
DNA replication
asj03410
Base excision repair
asj03420
Nucleotide excision repair
asj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AsACE_CH00642 (ligA)
03410 Base excision repair
AsACE_CH00642 (ligA)
03420 Nucleotide excision repair
AsACE_CH00642 (ligA)
03430 Mismatch repair
AsACE_CH00642 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asj03032
]
AsACE_CH00642 (ligA)
03400 DNA repair and recombination proteins [BR:
asj03400
]
AsACE_CH00642 (ligA)
Enzymes [BR:
asj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AsACE_CH00642 (ligA)
DNA replication proteins [BR:
asj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AsACE_CH00642 (ligA)
DNA repair and recombination proteins [BR:
asj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AsACE_CH00642 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AsACE_CH00642 (ligA)
MMR (mismatch excision repair)
DNA ligase
AsACE_CH00642 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AsACE_CH00642 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_lig_T4_1
5_3_exonuc
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
APX62079
LinkDB
All DBs
Position
683196..685235
Genome browser
AA seq
679 aa
AA seq
DB search
MTQETTVVAQMRQLIQLIAKHNHAYYVMDQPTIEDSEYDQLFHQLKALEEQYPALVQPDT
PTNRVGGQPLAKFMTVTHAVPMLSLGNVFNKEDLFAFARRIEERLPNQKIEYDVELKFDG
LAISLWYEHGVLVRGVTRGDGETGEDITQNVKTIRNLPKLLCEGHCKVPDLLEVRGEVLM
PKSGFEKLNAANLAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCVPHHGQ
TTMSASLEWLQHFGFAVGERHFICDSIEEVQQVYEQINEERPNLSVEIDGMVIKVNDLKQ
QKQLGFLSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVTVSNV
TLHNIGEIHRLDVRIGDTVSVYRSGDVIPKVEKVWPEFRPIDAVEVHLPENCPVCGSPVV
MPEGEALARCSGELYCAAQRIETIRHFVSRKAMDIEGLGDRWVESLLHLNLLKDVADIYH
LHEHRDQLLQIEKMGEKSVQNLIDSIENSKKTTLAAFIYALGIRGVGETTARMLANTFQT
LDALRRADLDALKKTPDVGDITAEWILDFFQAPHNLEVLDRLLAAGIHWDAPIAPTRQPL
NGESWVVTGTLSSMGRDEATQLLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGVP
VLNEEQFIALMKEHGQLPA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccactgtcgttgcgcaaatgcgccagctgattcaactgattgccaag
cataatcatgcctattatgtgatggatcagccgacgattgaggacagtgaatatgatcag
ctttttcatcagctcaaagcccttgaagaacaatatccagcattggtgcagccggataca
ccgactaaccgtgtcggtggtcagcctttagcaaaattcatgactgtaacgcatgccgta
ccgatgctatctttaggcaacgtatttaataaagaagatttatttgcctttgcccgtcgt
attgaagaacgcttgccgaaccagaaaattgaatatgatgtcgagctgaaatttgacggt
ctggcgatttccttgtggtatgaacatggtgttttagtacgcggtgtgacccgtggcgat
ggtgaaactggggaagacattacccagaatgtgaaaactatccgcaacctgccaaaatta
ttatgtgaaggtcactgcaaggtgcctgacctgctggaagtacgcggtgaagtcttgatg
ccgaaatccggttttgaaaagctgaatgcggcgaacttggccaaaggtgaaaagactttt
gccaatccacgcaatgccgccgcaggtagcttgcgtcagctggacccaaatattgctgct
tcacgtccactcgcattctatgcctatggtattgcgcagtgtgtgccgcatcatggacag
accacgatgtcagccagtctggaatggctacagcacttcggtttcgccgtgggtgagcgt
cattttatctgcgatagcattgaagaagtacagcaagtctatgagcagatcaatgaggaa
cgtccaaacctcagtgttgaaattgatggcatggtgatcaaggtcaatgacctgaaacag
caaaagcaattgggttttttaagtcgtgaaccacgctgggcaacggcttataaatttcct
gcggttgcagcactgacgacagttgaaaatattgactggcaggtggggcgtaccgggact
ttgacccctgtcgcacgtttgaatcctgtcgcagttggtggcgtaacggtttccaatgtg
accttgcataacattggggaaattcaccgtctggatgtccggatcggggatacggtcagc
gtttaccgtagtggggacgtcattcctaaagttgaaaaagtctggccagaattccgtcct
attgacgcagttgaagtacatctgccagaaaactgtccggtgtgtggttcccctgtagtg
atgccagaaggtgaagcactggcacgctgttcaggtgagttgtattgtgctgcacagcgt
attgaaaccatccgtcactttgtgtcacgtaaggcaatggatatcgaaggcttaggtgat
cgttgggtagaatctttattgcacttgaatctgttgaaagatgtggccgatatctatcac
ctgcatgagcatcgtgatcagctgctacagattgaaaaaatgggcgagaaatctgttcag
aacttgattgattctatcgaaaacagtaagaaaacgacattggctgctttcatttatgca
ttaggtattcgtggtgtcggtgaaaccacagcacgtatgctggccaatactttccagacg
ctggatgctttacgtcgtgctgatcttgatgcgctaaagaaaaccccagatgtcggtgat
attacggctgaatggattctggatttcttccaggcaccgcataacctggaagtactggat
cgtctattggcagcgggtattcactgggatgcaccaattgcgccaacacgtcagcctttg
aatggcgaaagctgggtggtaactggaactttaagctctatggggcgtgatgaagcaact
caattgctgcaagctttaggcgcacgtgtgagtggcagtgtgtcgagtaaaaccaaatgt
gtggttgcaggtgagaaagctggttcgaagctggataaggcagaaaagctcggcgtgcca
gtattaaatgaagaacagtttattgccttaatgaaagagcatggtcaacttcctgcttaa
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integrated database retrieval system
