Aequorivita sublithincola: Aeqsu_3237
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Entry
Aeqsu_3237 CDS
T02132
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asl
Aequorivita sublithincola
Pathway
asl03030
DNA replication
asl03410
Base excision repair
asl03420
Nucleotide excision repair
asl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Aeqsu_3237
03410 Base excision repair
Aeqsu_3237
03420 Nucleotide excision repair
Aeqsu_3237
03430 Mismatch repair
Aeqsu_3237
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asl03032
]
Aeqsu_3237
03400 DNA repair and recombination proteins [BR:
asl03400
]
Aeqsu_3237
Enzymes [BR:
asl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Aeqsu_3237
DNA replication proteins [BR:
asl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Aeqsu_3237
DNA repair and recombination proteins [BR:
asl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Aeqsu_3237
NER (nucleotide excision repair)
GGR (global genome repair) factors
Aeqsu_3237
MMR (mismatch excision repair)
DNA ligase
Aeqsu_3237
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Aeqsu_3237
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AFL82665
UniProt:
I3Z097
LinkDB
All DBs
Position
complement(3513293..3515287)
Genome browser
AA seq
664 aa
AA seq
DB search
MSTEQQITSLRNELREHNHNYYILDNPTISDFKFDQKLKQLQELEKANPEFYDANSPTLR
VGGEITKNFETVPHTYRMYSLDNSYSKEDLEDWEKRIEKMVDGNVEFTCELKYDGASISL
TYEDGKLKKAVTRGDGFQGDDVTANIKTIRSVPLQLKGDFPPLFEIRGEIVLPFEGFAKM
NAERVEAGEEPYRNPRNTASGSLKLQDSAEVAKRPLDCLLYSLIGERLPVKTQFESLEKA
RDWGFKVPKAAKLAKSLDEVLDFVNYWDIHRHELPYETDGVVVKVNNLQQQEELGYTAKS
PRWAMAYKFKAEQVSTLLNQITFQVGRTGAITPVANLEPVELAGTVVKRASLHNADQIEK
LDIREGDTVFVEKGGEIIPKIIGVDFTQRDPKSNPTEYITECPECRTELVRTEGEAQHYC
PNAEGCPPQIIGRIQHFISRKAMDIEGLGSETVALLVNNGLINNYADLYLLKEEQIVPLE
RMAQKSAENMVKGIEASKQIPFERVLFGLGIRYVGETVAKKLAKNYKTIDALKNASEEEL
ITVDEIGERIAQSVVSFFNSEENIATIERLKSYGVQLEISAEKLANQTDTLAGNTFVVSG
VFTKVSRDELKKLIEDNGGKVSSSISSKTNYVVAGENMGPSKKTKAESLGVAIISEDDFL
QMIS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgagcacagaacaacaaattacaagccttcgcaacgaacttcgcgagcataaccataat
tattacattctagacaatcccacaatttccgactttaaatttgaccaaaaactaaagcaa
cttcaggaactagaaaaagcaaatcctgagttttatgatgccaactcaccaaccttaaga
gttggtggtgaaatcacgaagaattttgaaaccgttccgcatacttatagaatgtattct
ttggataattcctattcaaaagaagatttggaagactgggaaaagcgaatcgaaaaaatg
gtagatggcaatgtggaatttacttgcgagcttaaatacgacggtgcttcaatcagttta
acttacgaagatggaaagctgaaaaaggccgtaacccgcggcgacggttttcaaggagat
gatgttacggcaaacataaaaaccatccgttctgtccctttgcagttgaagggagatttt
ccacctctttttgaaattcgcggagaaatagttttgccttttgaaggtttcgcaaagatg
aatgcagaaagagtagaggcaggcgaagaaccataccgaaacccaagaaacacagcttct
ggcagcctaaaattgcaagacagcgccgaggttgcaaaacgtccattggattgcctatta
tatagtttaataggtgaaaggcttcctgtaaaaacacaatttgaaagtctcgaaaaagcc
cgtgattggggttttaaagttccaaaagctgcaaaacttgcaaaaagtctcgatgaggtt
ttggatttcgttaactattgggacatccatcgccacgaattgccttatgaaaccgatgga
gtagtggtaaaggtgaacaatctacaacaacaagaagagcttggttataccgccaaatcg
ccacgttgggcaatggcctataaatttaaagcagaacaggtttccacccttttaaaccaa
attacgtttcaagtaggaagaactggcgccatcacacccgttgcaaatttagagcctgtg
gaattggccggaaccgttgttaaacgtgcgtcacttcacaatgccgatcaaattgaaaag
ctggacatccgcgaaggtgacacagtttttgttgaaaagggtggcgaaattattccgaag
ataattggggtagattttacgcagcgcgatccaaaatcaaatcctactgaatatattacc
gaatgccctgaatgtagaactgaattggttcgcaccgaaggtgaagctcaacattattgt
ccaaatgcagaaggatgcccaccacaaattattgggcggattcagcatttcatttctcgc
aaagcaatggatattgaaggattgggaagcgaaactgtagcacttttggttaacaatggc
ttgattaataattacgcagatttgtatcttttgaaagaagaacagatagttccgttggaa
agaatggcgcagaaaagtgctgagaatatggtcaaaggaatcgaagcctctaaacaaatt
ccttttgaaagagttcttttcggcttgggaattcgatacgttggtgaaaccgttgcgaag
aaactcgcaaaaaattacaaaaccattgatgcgttaaaaaacgcttccgaagaagaattg
ataactgttgatgaaattggcgaacgcattgcccaaagtgtagtttcctttttcaattcc
gaagaaaatattgcaaccattgaacgattgaaaagctatggcgttcagctggagatttcc
gcagaaaaacttgcaaaccaaacggatactttagcaggaaatacttttgtcgtttccgga
gtcttcacaaaagtttcccgcgacgaacttaaaaaactcattgaagacaacggcggcaag
gtttcaagttccatttcatccaaaacaaattacgttgtcgctggggaaaatatggggcct
agtaagaaaacgaaagctgaaagtttgggagttgcaattatttccgaagatgattttttg
caaatgatttcataa
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