Actinomyces slackii: NCTC11923_01292
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Entry
NCTC11923_01292 CDS
T06783
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asla
Actinomyces slackii
Pathway
asla03030
DNA replication
asla03410
Base excision repair
asla03420
Nucleotide excision repair
asla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NCTC11923_01292 (ligA)
03410 Base excision repair
NCTC11923_01292 (ligA)
03420 Nucleotide excision repair
NCTC11923_01292 (ligA)
03430 Mismatch repair
NCTC11923_01292 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asla03032
]
NCTC11923_01292 (ligA)
03400 DNA repair and recombination proteins [BR:
asla03400
]
NCTC11923_01292 (ligA)
Enzymes [BR:
asla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NCTC11923_01292 (ligA)
DNA replication proteins [BR:
asla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NCTC11923_01292 (ligA)
DNA repair and recombination proteins [BR:
asla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NCTC11923_01292 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NCTC11923_01292 (ligA)
MMR (mismatch excision repair)
DNA ligase
NCTC11923_01292 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NCTC11923_01292 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
VEG74658
UniProt:
A0A448KCI8
LinkDB
All DBs
Position
1:1532559..1535018
Genome browser
AA seq
819 aa
AA seq
DB search
MTASSTPQAPLTAIPAAARSRWSELVRMIEQARDAYYNAVESQSPVSDAHYDRLYRELEE
LEAAHPALARQDSPTRSVGGRATTDFAPAPHHERMYSLQDVFSIEEVQDWATRMAVETGV
PDDEAAMTAEVKIDGLAIALTYEHGALTRAATRGDGTTGEDVTGNVRTIASVPLILAGQD
HPELLEVRGEVYFPTAAFHEFNEARRTENLARQAAGSPLLQVFANPRNAAAGSLRQKDPA
ITASRPLAMIAHGVGAIRPAPGWQPPALQHEWYELLEAWGLPVSPYNAVVRGSAQRQAYI
ARYAEHRHDLLHEIDGIVFKLDDRAAQRALGATSRVPRWAAAYKYPPEEVHTRLLDIDVQ
VGRTGRVTPFGIMEPVLVAGSTVARATLHNATEVTRKGVRIGDMVIVRKAGDVIPEILGP
IIDERDGSERDFVMPRACPSCGADLAPAKDGDVDLRCPNTRSCPAQLAERVAHLGSRGAF
DIEGLGDEAAAALTRPDASRPEALAALAAGGTLETETGPLALEPQALEALAPAERMAAVE
AMLDQAGIGLQEPVLTGEVGIFDLVAEDLREVHVWRPIMRRGAPTGDWRRSRYFWSKEIR
TAKGEIKRPTAPAKNATAMLAQLRAARSQPLWRVLVALSIRHVGPTAARALAARFGSIEA
LRQADEELLAQVEGVGPTIAASWRSWLEVDWHREILERWAAAGVRTADEGHAGGAHTLAG
EAGAQETGQPAGRVLEGLTIVVTGSLEGFTRDGAKEAIIERGGKAAGSVSKRTSYVVVGD
KAGSKEAKARELGLTILDEEGFVALLAGGPDAVEQAAGQ
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgacagcctcctcaaccccccaggcgccgctgacggcgatccccgccgcggcgcgctcc
cgctggtcagagctcgtgcggatgatcgagcaggcccgcgacgcctactacaacgccgtg
gagtcccagagccccgtatccgatgcccactacgaccgcctctacagggagctggaggag
ctggaggccgcccaccccgccctggcccgccaggactcgcccacccgctcggtgggaggt
cgcgccaccacggacttcgccccggccccccaccacgagcgcatgtactccctccaggac
gtcttctccatcgaggaggtccaggactgggccacccgcatggccgtggagaccggggtc
cccgacgacgaggcggccatgaccgccgaggtcaagatcgacggactggccatcgccctg
acctacgagcacggcgcgctcacccgtgcggccacgcgcggggacggcaccaccggcgag
gacgtcaccggcaatgtgcgcaccatcgcctcggtccccctgatcctggcaggacaggat
catcccgagctgctcgaggtgcgcggcgaggtctacttccccaccgccgccttccacgag
ttcaacgaggcccgccgcaccgagaacctcgcgcggcaggccgccggctccccgctgctc
caggtcttcgccaacccccgcaacgccgcggccggctccctgcgccagaaggacccggcc
atcaccgcctcgcgccccctggccatgatcgcccacggggtgggggccatccgcccggcc
cccggctggcagcccccggccctgcagcacgagtggtacgagctgctggaggcctggggg
ctgcccgtctccccgtacaacgccgtcgtgcgcggcagcgcccagaggcaggcctacatc
gcccgctacgccgagcaccgccatgacctccttcacgagatcgacggcatcgtcttcaag
ctcgacgaccgggccgcccagcgcgccctgggcgccacctcccgggtcccgcgctgggcg
gcggcctacaagtacccgccagaggaggtgcacacccgcctgctggacatcgacgtccag
gtggggcgcacgggcagggtcacgcctttcgggatcatggagcccgtgctcgtggccggc
tccaccgtggcccgggccaccctccacaacgccaccgaggtgacccgcaagggcgtgcgc
atcggggacatggtcatcgtgcgcaaggcgggggacgtcatccccgagatcctggggccg
atcatcgacgagcgcgacggctccgagcgcgacttcgtcatgccccgggcctgcccctcc
tgcggagccgacctggccccggccaaggacggcgatgtggacctgcgctgccccaacacc
cgatcctgccccgcccagctcgccgagcgggtagcgcacctgggctcccggggggccttc
gacatcgagggcctgggcgatgaggcggccgcagccctgacccgccccgacgcctcccgc
cccgaggccctggccgccctggccgccggcggcaccctggagaccgagaccggccccctc
gccctggagccccaggcgctggaggccctggccccggccgagcgcatggcagcggtcgag
gccatgctcgaccaggcggggatcgggctccaggagccggtcctcaccggcgaggtgggc
atcttcgacctggtggccgaggacctgcgcgaggtgcacgtgtggcgcccgatcatgcgg
cgaggcgcccccaccggggactggcggcgcagccgctacttctggtccaaggagatccgc
accgccaagggcgagatcaagcgccccaccgcgccggccaagaacgccaccgccatgctg
gcccagctccgcgcggctcgctcccagcccctgtggcgggtgctggtggccctgtcgatc
cgccacgtgggccccacggccgcacgcgccctggccgcgcgcttcggctccatcgaggca
ctgcgccaggccgatgaggagctgctcgcccaggtcgagggggtggggcccaccatcgcc
gcctcctggcgctcctggctggaggtcgactggcatcgggagatcctcgagcgctgggcc
gccgccggggtgcgcaccgccgatgagggccatgcgggcggggcgcacaccttggccggg
gaggccggcgcccaggagacggggcagccggcgggccgtgtcctggagggcctgaccatc
gtggtcaccggctccctggagggcttcacccgcgatggggccaaggaggcgatcatcgag
cggggcggcaaggcggccggcagcgtctcgaagcgcaccagctacgtcgtcgtgggggac
aaggccggctccaaggaggccaaggcccgcgagctgggcctgaccatcctggacgaggag
ggcttcgtcgcgctcctggccggcggacccgacgccgtggagcaggcggccggccagtga
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