Aneurinibacillus soli: CB4_04102
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Entry
CB4_04102 CDS
T05174
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asoc
Aneurinibacillus soli
Pathway
asoc03030
DNA replication
asoc03410
Base excision repair
asoc03420
Nucleotide excision repair
asoc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asoc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CB4_04102 (ligA)
03410 Base excision repair
CB4_04102 (ligA)
03420 Nucleotide excision repair
CB4_04102 (ligA)
03430 Mismatch repair
CB4_04102 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asoc03032
]
CB4_04102 (ligA)
03400 DNA repair and recombination proteins [BR:
asoc03400
]
CB4_04102 (ligA)
Enzymes [BR:
asoc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CB4_04102 (ligA)
DNA replication proteins [BR:
asoc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CB4_04102 (ligA)
DNA repair and recombination proteins [BR:
asoc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CB4_04102 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CB4_04102 (ligA)
MMR (mismatch excision repair)
DNA ligase
CB4_04102 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CB4_04102 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
BRCT_2
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
BAU29848
UniProt:
A0A0U4WNM6
LinkDB
All DBs
Position
complement(4021534..4023543)
Genome browser
AA seq
669 aa
AA seq
DB search
MDRTETIARIEQLRATIERHNYLYYVKDEPSIADYEYDKLMQELIRLEGEFQELVTAESP
TQRVGGTPLASFDKVEHRIPMLSLSNAFNAQDLREFDRRVQQGIGTEELIRYVCELKIDG
LAVSLRYENGRFLQGATRGDGRTGEDITQNLRTIRSLPLVLKQPLSIEVRGEAYMPRRAF
ERLNHERAEREEALFANPRNAAAGSLRQLDPKIAAERSLDLFLYSMVGDEGLPAASHSGA
LALMEELGFKVNPERRVFDGIEAVISFIEGWTDRRSELAYDIDGMVVKVDSFAYQDELGF
TAKSPRWAIAYKFPAEEAVTVLRDIEITVGRTGAITPTALLNPVSLAGTTVERASLHNED
IIREKGIMLGDHVIVKKAGDIIPQIVGVKTEMRDGSEQPYQMPTHCPECNSELVRLEEEV
ALRCINPQCPAQIREGIIHFVSRNAMNIDGVGEKVVKQLHEHELIHSVADLYDLERDKLL
QLERMGEKSVDNMLAAIEKSKENSLERLLFGLGIRFVGEKAGSILARHFGTMDRLREATE
EELTGVHEIGTKMAGSIVKYFAKPEVTGTIERLQAAGVNMDYKGLRIDDIPTDSPFSGKT
IVLTGTLEQITRKEAQQMIETRGGKVAGSVSKKTDLVVAGEAAGSKLVKANELGIQVINE
ETFLEWVRA
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggaccgaacggaaacgatcgcacgcatcgagcaactgcgtgccacgattgagcggcat
aattatttgtactatgtcaaagatgagccatccatcgcggattatgaatacgataagctc
atgcaggaattgattcggcttgaaggagagtttcaggagttggttacagccgaatctccg
actcagcgcgtcggggggacgccgcttgcctctttcgataaagtggagcaccgcattccg
atgcttagcttaagcaatgcttttaacgcacaagatttgcgtgagtttgaccgtcgtgtg
cagcaggggatcggtacagaagagttaatacgctacgtatgcgaattaaaaattgacggg
ttagctgtttccttacgctatgagaacggacgattcttgcagggagcgacacgcggggat
gggcgtacgggggaagatattacgcagaacttacgcaccatccgttcgctacccctggtg
cttaaacagccgctcagcatcgaagtgcgtggggaagcgtacatgccccgccgcgcattc
gagcggttgaatcatgagcgggccgaacgggaagaggcgctgtttgccaatccgcgcaac
gccgccgcaggctccctgcgccagcttgaccccaaaatcgcagcagaacgctcgctggat
ctattcttgtattcgatggtcggggacgaggggcttcccgctgcttcccacagcggtgcg
cttgcgttgatggaagagcttggtttcaaagtaaacccggagcggcgggtgtttgacgga
atcgaagcagtcatttcatttatcgaaggctggacggatcgccgtagtgaacttgcgtat
gacattgatggcatggttgtgaaagtggacagcttcgcttatcaggacgaacttggcttc
acagccaaaagcccgcgctgggcaattgcgtataagtttccggcagaagaagcggtgact
gtactccgggacatcgagattacagtaggccgtacaggtgccattacgccaaccgctctt
ctgaacccggtcagcctggctggaacaacggtggagcgggcttctctgcacaacgaagac
attattcgcgagaaggggattatgctgggtgatcatgtcatcgtcaaaaaggcaggagac
attatcccgcagatcgtcggtgttaaaacagagatgcgtgacggcagcgaacagccgtat
cagatgcccactcactgtccggaatgcaacagcgaacttgtccgtctggaagaagaagta
gccctgcgctgcatcaatccacagtgcccggcacagattcgcgagggtatcattcatttt
gtctcccgcaatgcgatgaacattgacggggtgggcgagaaagtggtcaaacagctgcat
gagcacgaactcattcacagtgtagctgacctgtacgatttggaacgggataagctgctt
cagctagaacgtatgggtgagaagtcagttgataacatgcttgcggcgattgagaaaagt
aaagagaactcattagagcgcctgttgttcggccttggtatccgttttgtcggagagaag
gcgggaagcattctggctcgtcactttggtacgatggatcgcctgcgcgaagcgacggaa
gaggaattgaccggtgttcatgagatcggtacaaaaatggcgggaagcattgtcaaatac
tttgccaagccggaagtgacggggacgattgagcgcttgcaggcagctggcgttaatatg
gactataagggactgcgtatcgacgacattccaacagattccccattctccggtaagacg
attgtgctgacgggaacacttgagcagatcacacgtaaagaagcacagcagatgatcgaa
acgcgtggcggcaaagtagcgggaagcgttagtaagaagaccgacctggttgttgcaggt
gaagcagcaggctcgaaacttgtaaaagcgaatgagttagggattcaggtcattaacgag
gaaacatttttggaatgggtacgtgcctaa
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integrated database retrieval system
