Alteromonas stellipolaris LMG 21856: AOR13_1386
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Entry
AOR13_1386 CDS
T04153
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asp
Alteromonas stellipolaris LMG 21856
Pathway
asp03030
DNA replication
asp03410
Base excision repair
asp03420
Nucleotide excision repair
asp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AOR13_1386
03410 Base excision repair
AOR13_1386
03420 Nucleotide excision repair
AOR13_1386
03430 Mismatch repair
AOR13_1386
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asp03032
]
AOR13_1386
03400 DNA repair and recombination proteins [BR:
asp03400
]
AOR13_1386
Enzymes [BR:
asp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AOR13_1386
DNA replication proteins [BR:
asp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AOR13_1386
DNA repair and recombination proteins [BR:
asp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AOR13_1386
NER (nucleotide excision repair)
GGR (global genome repair) factors
AOR13_1386
MMR (mismatch excision repair)
DNA ligase
AOR13_1386
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AOR13_1386
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
5_3_exonuc
DZR_2
IML1_N
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
ALM90427
LinkDB
All DBs
Position
1619094..1621127
Genome browser
AA seq
677 aa
AA seq
DB search
MSDSLEQAKARAESLRGQINEYNYQYYVLDAPTVPDAQYDRDMQELISIEKQFPELQSVS
SPSQKVGGSALSAFEQVTHEVPMLSLDNAFDDVSLLAFEKRIYDRLKDNKALSFSCEPKL
DGLAVSILYENGEMVRAATRGDGQVGENITTNVRTIANVPLKLRGENYPSRLEVRGEVFM
PKKGFEALNDYQRANDGKVFANPRNAAAGSLRQLDSKVTAKRPLMFYAYSLGVVTPEDFE
LPRYHSARLAQLGDWGIPLCPDIDTAEGGKGCLEYYQRILTLRDDLPYDIDGVVFKVDDI
SVQQTLGFVARAPRWAIAQKFPAQEEITKLLDVEFQVGRTGAITPVARLEPVFVGGVTVS
NATLHNQDEIDRLGVKVGDYVIIRRAGDVIPQVVSVVQAKRDDNVKDIVFPTDCPVCGSN
VEKLEDEAVARCTGGLICAAQRKQALKHFASRKAFDIDGLGDKLVDQLVDADLVHSPADF
FNLKLGDVVGLERMAEKSAAKLLLSLEASKATTLAKFLYALGIREVGEATAANLAMHFET
LEAIRSASEDELIEVQDVGAIVAAHLHNFFNEPHNTDVIDALLEAGIHWPAIEKKPQSAL
PLDGQTCVVTGILSEMGRSDVKAKLQLLGAKVAGSVSKNTSFLVAGEKAGSKLTKAQELD
VEVWDEATLLAFLAEHD
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
atgtcagactcgttagaacaagctaaagcccgcgccgaatcacttcgtgggcaaataaat
gaatacaactatcaatactatgtgctcgatgccccaacggtgcccgatgcacaatatgat
agagatatgcaggaactcattagtatcgaaaagcagttccctgaattgcagagtgtgagt
tcacccagtcagaaagtgggtggctctgcgctttctgccttcgagcaggttacgcatgaa
gtgcctatgttgtctctagataacgcgtttgatgatgtgtcgctattggcgtttgaaaaa
cgtatttacgatcgcctgaaagataataaagcgcttagctttagctgtgaaccaaagctt
gatgggttagccgttagtattctttatgaaaatggcgaaatggtgcgtgcagctacgcga
ggggatggtcaagttggcgagaatattactaccaatgttcgcaccatcgctaacgttcct
ctaaaattacgtggcgaaaactacccatcccgattggaagttcgcggcgaagtatttatg
cctaagaagggctttgaagcgcttaatgactatcagcgtgctaacgacggaaaagtgttc
gctaatccacgtaatgctgccgctggcagccttaggcagcttgattcaaaagtaacagcg
aaacgtccattaatgttttacgcctattctttgggtgtggttacgcctgaagatttcgag
ctgccacgttatcatagtgcgcgattagcgcaattaggtgactggggcatacccttatgc
cctgatattgacactgctgaaggcggcaaaggctgcttagaatactaccagcgcatatta
acccttcgtgacgacttgccttacgacatcgatggcgtagtgtttaaagttgatgatatt
agcgtacagcaaacattaggttttgtagcacgggcgccacgctgggcaattgcgcagaag
tttcctgctcaagaagaaattaccaaactgttagatgttgagtttcaagtagggcgtacc
ggtgcgattacccctgtagcgcgattagagcccgtatttgtgggtggtgttacggtatca
aacgccacattacataaccaagatgaaatagaccgcttaggggtgaaagtaggcgactac
gtaatcattcgccgagcgggtgatgttattcctcaagtggtgtctgttgtacaagccaaa
agagatgacaatgttaaagacattgtctttcccacagattgtccagtatgtggttctaat
gtagaaaaactagaagacgaagccgttgctcgctgtaccggcggccttatttgtgcggcg
cagcgcaagcaagcgttgaagcattttgcttctcgtaaagcatttgatatcgacgggtta
ggcgataagttggtagatcaactcgttgatgccgatttagtgcatagcccagcagatttc
ttcaatcttaaattgggcgatgttgttggtcttgagcgtatggctgaaaagtctgctgcc
aagttgttgctgtctcttgaggcatcgaaagctaccacgttagctaagtttttatatgcg
ttagggattagagaagtaggtgaagccacggcggcaaatcttgcgatgcattttgaaacc
ctagaggctattcgtagcgcaagcgaagatgaactcattgaagtgcaagatgttggcgca
attgtagcggcgcatttgcataacttctttaatgagccacataacaccgatgttatcgac
gcattacttgaggcgggtattcattggcctgcaattgagaaaaagccacaaagtgcgctt
cctctagatggacaaacctgcgtagtaacaggaatattaagcgaaatgggtcgctctgat
gttaaagcgaaactacaattgttgggtgctaaagtggcaggctcggtatcgaagaatacc
tcctttttagtcgcgggtgaaaaagcgggatcgaagctgaccaaagcacaagagctagat
gttgaagtgtgggatgaagcgacgttgctcgcctttttagcagagcatgactag
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integrated database retrieval system
