Alkalitalea saponilacus: CDL62_16765
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Entry
CDL62_16765 CDS
T04906
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asx
Alkalitalea saponilacus
Pathway
asx03030
DNA replication
asx03410
Base excision repair
asx03420
Nucleotide excision repair
asx03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CDL62_16765
03410 Base excision repair
CDL62_16765
03420 Nucleotide excision repair
CDL62_16765
03430 Mismatch repair
CDL62_16765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asx03032
]
CDL62_16765
03400 DNA repair and recombination proteins [BR:
asx03400
]
CDL62_16765
Enzymes [BR:
asx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CDL62_16765
DNA replication proteins [BR:
asx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CDL62_16765
DNA repair and recombination proteins [BR:
asx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CDL62_16765
NER (nucleotide excision repair)
GGR (global genome repair) factors
CDL62_16765
MMR (mismatch excision repair)
DNA ligase
CDL62_16765
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CDL62_16765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH_5
PTCB-BRCT
BRCT_2
HHH
zf-tcix
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ASB50684
UniProt:
A0A1T5DEZ0
LinkDB
All DBs
Position
4383149..4385650
Genome browser
AA seq
833 aa
AA seq
DB search
MEHPGIQEKIKQLRDELHHHNFLYYIKNSPEISDKEFDRKLAELADLEKQHPEFQDPNSP
TMRVGSDLSQDFNTVKHKYPMLSLGNTYSEGELRDFINRVEKLAGGSVVFVCELKYDGTA
ISLSYENGRLVSGITRGDGIEGDDVTSNIKTIKSIPLQLKGDFPPSFDIRGEIFISRKSF
EKLNEERKNENLQLFANPRNAAAGSLKLQNSSLVAKRPLECYLYHMLGENLPGDSHFENL
KKAETWGLRVSPHMELCRSVDEVIAFVHHWDNARMDLPFEIDGIVIKTDSISLREKLGFT
AKSPRWAISYKFQAESAYTRLISVDFQVGRTGAVTPVANLEPVPLAGTTVKRASLHNSDI
IAKLDLHLNDLVAVEKGGEIIPKITAVDVAQRPPGVPKVEFIKNCPECGTLLIKNEGEAA
HYCPNDSGCSPQIVGKMIHFVSRKALDIDCLGEETIELFYKKGLIKDISDLYTIPERKSE
FLNLKDLKTTDEAGNPFPSHIPMEKILFSLKGAPSLSVCKKIADILLQIDSQSIPEEIQN
RLPSEDKNLKFLSIGENIRFIKRLNLQNHVVGFAELLKALNIPGLDVADLEQVADSFRYF
YFLQNAFSQEIEEKAGLDFIKANALVNGIKSTLSKPDRTNHLSLVSIQQKTFDRITASLK
ESKRQPFERVLFALGIRYVGETVAKNLARAFRSVDALSSAGLDQLLEVKDIGASIAGSVI
AYFSDTENRQLVERLRSCGLQMEVSEDETEVVGGGLNGEVFVITGSFATPQRRKELKALV
EKHGGKSTDSVSKNTSFLLAGENAGPEKLKKAENLGVKLIDESEFLKMISEQD
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggaacatccaggtattcaggaaaaaattaagcagctgcgcgatgagttgcaccaccat
aatttcctctattatataaaaaacagtccggaaatttctgacaaggaatttgaccggaaa
cttgcggagctggcagatcttgaaaaacaacatcccgaatttcaggatcccaacagccca
acaatgagggttggaagtgatttaagccaggattttaataccgttaagcacaagtacccc
atgctttcgttgggtaatacctattcagaaggtgagttacgcgattttatcaacagggtt
gagaaacttgccggtggatcggttgttttcgtttgtgaactgaagtatgatggcacggcc
atatcactttcatacgaaaatgggcgtctggtgtccggcataacccggggagacggaatt
gagggtgatgatgtaacgtccaacatcaagaccataaaaagcataccattgcagctaaag
ggcgactttcccccatcgttcgacatcagaggcgagatttttatatcgcgaaaaagtttt
gagaaactcaatgaagaaaggaaaaatgaaaatcttcagctattcgccaatccccgaaac
gcggcagccggctccctgaaactacaaaacagttctctggtggctaagcggcctctggag
tgctatctatatcacatgctgggcgaaaatcttcccggcgacagccatttcgaaaatctg
aagaaggccgaaacatggggtttaagagtatctccccacatggaactttgccgaagtgtt
gacgaagtgattgcctttgtccaccattgggataatgcccgcatggatttgccgtttgaa
atagatggcatcgttataaaaactgattccatctctttgagggaaaaattaggcttcacc
gccaaatctccccgatgggccatttcatataaatttcaggccgaatcggcatatacccga
ttgatttctgtggattttcaggtggggcgcacaggagccgttacgccagttgccaatctg
gaaccggttccgctggcaggtacaacagtaaaaagggcttcacttcataattcagatatc
attgcaaaactggatttgcatttgaatgatttggtggcggtggagaaaggtggagaaatc
atccctaaaattacagccgttgatgtggctcaacgtccacccggggtaccaaaagtggag
tttatcaaaaattgtcccgagtgtggcaccctattaattaaaaacgaaggtgaagcggcg
cattattgtcccaacgatagcggttgctcccctcagattgtggggaaaatgatccatttc
gttagtcgtaaagccttggatattgattgtttgggggaagagaccatcgaacttttctac
aaaaagggactgattaaagatatttctgatttatataccattccggaaagaaaaagtgaa
tttttaaatctgaaagatttaaaaacaactgacgaagcaggcaatccttttccatcgcac
attccgatggaaaagattcttttttcgctcaaaggtgcaccatctctgtcggtttgtaaa
aaaatagcagatatcttactgcagatcgattcacaatcaattcctgaagagattcaaaat
cgattaccgtcagaggataaaaacctgaaatttttatccataggagaaaatatcaggttt
attaagcggttaaacctgcaaaaccacgtggtgggttttgcagaattacttaaagccctg
aatattccggggctagatgttgcagatttggagcaggttgctgattcattccgatatttc
tatttcttacaaaatgcattttcacaagagattgaagagaaagccggtttagattttatc
aaagctaatgcacttgtaaatggcatcaaaagcactctctcaaaacctgatcgtaccaac
catctgtcgttggtcagcatccagcaaaaaacctttgatcgcataaccgcctcgctgaaa
gaatcaaagagacagccttttgagcgtgttttgtttgctctgggcattcgctatgtcggt
gaaacagtagctaaaaatctcgcgagggcttttcgatcggtggatgcactcagcagtgcc
ggtttggaccaacttttggaggttaaagacattggggcatccattgccggaagtgtaatc
gcgtatttttctgatacagaaaaccgacaactggttgaacgcttgagatcctgtggattg
caaatggaagtttcggaggatgagacagaggttgttggtggcggactaaacggagaggtt
tttgtgatcacaggaagttttgccacccctcaaaggcgaaaggagttgaaggcactggtt
gaaaaacatggaggaaaatcaaccgattcggtatcaaaaaacaccagttttttgctggct
ggagaaaatgcggggccagagaaattgaaaaaagctgaaaatctgggtgtaaaactcatt
gatgagtcagaatttttaaaaatgatcagcgagcaggattaa
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