Apodemus sylvaticus (European woodmouse): 127682988
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Entry
127682988 CDS
T10613
Symbol
Setdb1
Name
(RefSeq) histone-lysine N-methyltransferase SETDB1 isoform X1
KO
K11421
[histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase [EC:
2.1.1.366
]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl00310
Lysine degradation
asyl01100
Metabolic pathways
asyl04550
Signaling pathways regulating pluripotency of stem cells
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
127682988 (Setdb1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04550 Signaling pathways regulating pluripotency of stem cells
127682988 (Setdb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
asyl03036
]
127682988 (Setdb1)
Enzymes [BR:
asyl01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.366 [histone H3]-N6,N6-dimethyl-lysine9 N-methyltransferase
127682988 (Setdb1)
Chromosome and associated proteins [BR:
asyl03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
127682988 (Setdb1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
127682988 (Setdb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5604
Tudor_4
SET
MBD
Tudor_5
Pre-SET
Chromo_MORC2_6th
53-BP1_Tudor
DUF4537
Motif
Other DBs
NCBI-GeneID:
127682988
NCBI-ProteinID:
XP_052035743
LinkDB
All DBs
Position
4:68520636..68555786
Genome browser
AA seq
1302 aa
AA seq
DB search
MSSFPGCMSLAAAPAAADSAEIAELQQAVVEELGISMDELRQFIDEELEKMDCIQQRKKQ
LAELETWVLQKESEVAYVDRLFDDASREVTNCESLVKDFYSKLGLQYHDSSSEDEASQPT
EIIEIPDEDDDVLSIDSGDAGSRTPKDQKLREAMAALRKSAQDVQKFMDAVNKKSSSQDL
HKGTLGQVSGELSKDGDLIVSMRILGKKRTKTWHKGTLIAIQTVGLGKKYKVKFDNKGKS
LLSGNHIAYDYHPPVDKLFVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDG
YASYVTQSELYPICRPLKKTWEDIEDSSCRDFIEEYITAYPNRPMVLLKSGQLIKTEWEG
TWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEPMFSMKTSSASAMEKKQGGQLRTR
PNMGAVRSKGPVVQYTQDLTSTGIQFKPMEPLQPIAPPAPLPILPLSPQAADPESLESQL
AQSRKQVAKKSTSFRPGSVGSGHSSPTSSTLSENVPAGKLGINQTYRSPLTSVTSTPAPA
APQGPPAPPGPPAPPGPPAPPAFHGMLERAPAEPSYRAPMEKLFYLPHVCSYTCLSRIRP
MRNEQYRGKNPLLVPLLYDFRRMTARRRVNRKMGFHVIYKTPCGLCLRTMQEIERYLFET
GCDFLFLEMFCLDPYVLVDRKFQPFKPFYYILDITYGKEDVPLSCVNEIDTTPPPQVAYS
KERIPGKGVFINTGPEFLVGCDCKDGCRDKSKCACHQLTIQATACTPGGQINPNSGYQYK
RLEECLPTGVYECNKRCKCDPNMCTNRLVQHGLQVRLQLFKTQNKGWGIRCLDDIAKGSF
VCIYAGKILTDDFADKEGLEMGDEYFANLDHIESVENFKEGYESDVPSSSDSSGVDMKDQ
EDGNSGSEDPEESNDDSSDDNFCKDEDFSTSSVWRSYATRRQTRGQKENELSEMTSKDSR
PPDLGPPHVPVPPSVSVGSCNPPSSEETPKNKVASWLSCNSVSEGGFADSDSRSSFKTSE
GGDGRAGGGRGEAERASTSGLSFKDEGDTKQSKKEDPEDRNKTSVVTEGSQNHGHNPPLK
SEGLRRPASKISMLQSQRVVTSTQSNPDDILTLSSSTESEGESGTSRKPTAGQTSATAVD
SDDIQTISSGSDGDDFEDKKNLSGPTKRQVAVKSTRGFALKSTHGIAIKSTNMASVEKGE
SAPVRKNTRQFYDGEESCYIIDAKLEGNLGRYLNHSCSPNLFVQNVFVDTHDLRFPWVAF
FASKRIRAGTELTWDYNYEVGSVEGKELLCCCGAIECRGRLL
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccttccctgggtgcatgagtttggctgcagcgccagctgcagctgactctgca
gagattgctgagctgcagcaggcagtggttgaagagctgggtatctcgatggatgagctt
cgtcagttcattgatgaagaactggaaaagatggactgtatacagcagcgcaagaagcag
ctcgcagagctggagacgtgggtactacagaaagagtctgaggtggcttatgttgatcgg
ctctttgatgatgcatccagggaagtgactaattgtgagtctttggtgaaggatttctac
tctaagctgggactacagtatcatgacagtagctctgaagatgaagcttcccagcctaca
gagataattgagattcctgatgaagatgatgatgtcctcagtattgactcaggtgatgct
gggagcagaactccaaaagaccagaagcttcgtgaggctatggctgctttaaggaaatca
gcccaagatgtccagaagttcatggatgctgtcaacaagaaaagcagttctcaagaccta
cataaaggaaccttgggtcaggtgtctggagaactgagcaaagatggggacctgatagtc
agcatgcggattctgggcaagaagaggactaagacgtggcacaaaggcacccttattgcc
atccagactgttgggctaggaaagaaatacaaagtgaaatttgacaacaaaggaaagagt
ctgctgtctgggaaccacattgcctatgattaccaccctccggtggacaagctgtttgtg
ggcagtcgggtggtggccaaatacaaagatggaaatcaggtctggctttatgctggcatt
gtagctgagacccctaacgtcaagaacaagctcagatttttaattttttttgacgatggc
tatgcttcctatgtcacccagtcagagttgtaccccatttgccgaccattgaaaaagact
tgggaggacatagaagatagctcctgccgagacttcatagaggaatatatcactgcctat
ccaaaccgcccaatggtacttctcaagagtggccagcttatcaagactgagtgggaaggc
acatggtggaaatctcgagttgaagaggtggatggcagcctagtcaggatcctctttctg
gatgacaaaagatgtgagtggatctatcgaggctctacacgcctggaacctatgttcagt
atgaagacatcctcagcctctgcaatggagaagaagcagggggggcaactcagaacccgt
cctaatatgggtgctgtgaggagcaaagggcctgttgttcagtacacacaagatttaacc
agtactggaatccagtttaagcccatggagcctctgcagcctatagctccaccggcccca
cttccgatacttcctctttccccccaagcagctgaccctgaaagcttagaaagccagctt
gctcaatcacggaagcaagtggccaaaaagagcacatcattccgaccaggatctgtgggt
tctggccattcctcccctacttcgtccacacttagtgaaaatgtgcctgctgggaaactt
gggattaaccagacatacagatcacctttgacctcagtaacatctaccccagcacctgca
gccccccaagggcctccagcccccccagggcctccagcccccccagggcctccagcccct
ccagccttccatggcatgttagagcgggcaccagctgagccctcctaccgtgcccccatg
gagaagcttttctatttacctcatgtctgcagttacacctgcttgtcccggatcagaccc
atgaggaacgaacagtatcggggcaagaaccctctattggttccactactgtatgacttc
cggaggatgacagcacggcgcagagttaaccgcaaaatgggctttcatgtaatctataag
acaccctgtggtctctgccttcggacaatgcaggaaatagagcgctacctttttgagact
ggctgtgattttctgttcctggagatgttctgtttagatccatatgttcttgttgacaga
aagtttcaaccctttaagcctttttactatattttggacatcacctatggcaaggaagat
gttcccctgtcctgcgttaatgagattgatacgactcccccaccccaggtggcctacagc
aaagaacgcattcctggcaagggcgttttcattaacacaggccctgaatttctggttggc
tgtgactgcaaggatgggtgtcgggataaatccaaatgtgcctgccatcagctaactatc
caggccacagcctgtaccccagggggtcaaatcaaccctaactctggctatcagtacaaa
aggctagaagaatgtctgcccacaggggtttatgagtgtaacaaacgctgcaaatgtgac
ccaaacatgtgcacaaatcggttggtgcagcatggactacaggttcgactacagctattt
aagacacaaaacaagggctggggtatccgctgcttggatgacattgccaaaggctctttt
gtctgcatttatgcaggcaaaatcctgacagatgactttgcagacaaagaaggcctggaa
atgggtgatgagtactttgcaaatctggaccacattgaaagtgtggagaacttcaaggaa
ggatatgaaagtgatgtcccaagttcctctgacagcagtggggtagatatgaaggaccag
gaagatggcaacagtggttcagaggaccctgaagaatccaatgatgacagctctgatgat
aacttctgtaaggatgaggacttcagcactagttcagtgtggcgtagctatgctacccgg
aggcagactcggggtcagaaggaaaatgaattgtctgagatgacttccaaggactcccgc
cccccagaccttgggcctccacatgttcctgtccctccctcagtatctgtagggagctgc
aatccaccttcttctgaagagacacccaagaacaaggtggcctcgtggttgagctgcaac
agtgtcagtgaaggtggatttgctgactctgacagccgttcctccttcaagacgagtgaa
ggtggagatggccgtgctgggggaggccggggagaggctgaaagggcctctacctcagga
ttgagcttcaaggatgaaggagacactaagcagtctaaaaaagaggaccctgaggaccga
aacaagacgtcagtagttactgaaggctctcagaatcatggacacaatcctcccctgaag
tctgaggggcttcgccgacctgctagtaaaatttctatgctccagagtcagcgagttgtg
acctctactcagtcaaaccctgatgatatcctgacactgtccagcagcacagaaagtgag
ggggaaagtggaaccagccgaaagcccactgctggtcagacttcagccacagccgttgac
agtgatgacatccagaccatctcttctggctctgatggtgatgactttgaggacaagaag
aacttgtcaggaccaacaaagcgccaggtggcagtaaaatcaacccgaggctttgctctt
aaatcaacccatggtattgccattaaatcaaccaacatggcttccgtggaaaagggggag
agtgcaccagttcgtaagaacacacgccagttctatgatggtgaagagtcttgctacatc
attgatgccaaacttgaaggcaacctaggccgctacctcaatcacagctgcagccccaac
ctgtttgtccagaatgttttcgtggatacccatgatcttcgcttcccttgggtggccttc
tttgccagcaagagaatccgggctggaacagagctcacttgggactacaactacgaagtg
ggcagtgtggaaggcaaggagctgctgtgctgctgtggggccattgagtgcagagggcgg
cttctgtag
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integrated database retrieval system
