Apodemus sylvaticus (European woodmouse): 127687387
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Entry
127687387 CDS
T10613
Symbol
Slit1
Name
(RefSeq) slit homolog 1 protein
KO
K06838
slit 1
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl04360
Axon guidance
asyl04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
127687387 (Slit1)
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
127687387 (Slit1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
asyl00536
]
127687387 (Slit1)
Glycosaminoglycan binding proteins [BR:
asyl00536
]
Heparan sulfate / Heparin
Axon guidance molecules
127687387 (Slit1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
LRRNT
LRRCT
LRR_1
hEGF
LRR_9
EGF_TEN
LRR_14
EGF_DL_JAG
LRR_EndoS
EGF_3
EGF_Teneurin
EGF_2
FNIP
Motif
Other DBs
NCBI-GeneID:
127687387
NCBI-ProteinID:
XP_052041922
LinkDB
All DBs
Position
1:19935520..20079929
Genome browser
AA seq
1531 aa
AA seq
DB search
MALSPQRGSSSGLSRPELWLLLWAAAWRLGATACPALCTCTGTTVDCHGTGLQAIPKNIP
RNTERLELNGNNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQ
LQVLPELLFQNNQALSRLDLSENSLQAVPRKAFRGATDLKNLQLDKNQISCIEEGAFRAL
RGLEVLTLNNNNITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFT
QCSGPASLRGLNVAEVQKSEFSCSGQGEAAQAPACTLSSGSCPAMCSCSNGIVDCRGKGL
TAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAPDAFQGLRSLN
SLVLYGNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQSL
AKGTFTSLRAIQTLHLAQNPFICDCNLKWLADFLRTNPIETTGARCASPRRLANKRIGQI
KSKKFRCSAKEQYFIPGTEDYHLNSECTSDVACPHKCRCEASVVECSGLKLSKIPERIPQ
STTELRLNNNEISILEATGLFKKLSHLKKINLSNNKVSEIEDGTFEGAASVSELHLTANQ
LESIRSGMFRGLDGLRTLMLRNNRISCIHNDSFTGLRNVRLLSLYDNHITTISPGAFDTL
QALSTLNLLANPFSCNCQLAWLGDWLRKRKIVTGNPRCQNPDFLRQIPLQDVAFPDFRCE
EGQEEVGCLPRPQCPQECTCLDTVVRCSNKHLQALPKGIPKNVTELYLDGNQFTLVPGQL
STFKYLQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNALQCIPPLAFQGLRSLRLLSLH
GNDVSTLQEGIFADVTSLSHLAIGANPLYCDCHLRWLSSWVKTGYKEPGIARCAGPPEME
GKLLLTTPAKKFECQGPPSLAVQAKCDPCLSSPCQNQGTCHNDPLEVYRCTCPSGYKGRN
CEVSLDSCSSNPCGNGGTCRAREGEDAGFTCSCPFGFEGPTCGVNTDDCVKHACVNGGVC
VDGMGNYTCRCPLQYTGRACEQLVDFCSPDLNPCQHEAQCVGTPDGPRCECVPGYTGDNC
SENQDDCKDHQCQNGAQCVDEVNSYACLCAEGYSGQLCEIPPAPRNSCEGTECQNGANCV
DQGSRAVCQCLPGFGGPECEKLLSVNFVDRDTYLQFTDLQDWPRANITLQVSTAEDNGIL
LYNGDNDHIAVELYQGHVRVSYDPGSYPSSAIYSAETINDGHFHTVELVTFDQMVNLSID
GGSPMTMDNFGKHYTLNSEAPLYVGGMPVDVNSAAFRLWQILNGTSFHGCIRNLYINNEL
QDFTKTQMKPGVVPGCEPCRKLYCLHGICQPNATPGPVCHCEAGWGGLHCDQPVDGPCHG
HKCVHGKCVPLDALAYSCQCQDGYSGALCNQVGAVAEPCGGLQCLHGHCQASATQGAHCV
CSPGYSGELCEQESECRGDPVRDFHRVQRGYAICQTTRPLSWVECRGACPGQGCCQGLRL
KRRKLTFECSDGTSFAEEVEKPTKCGCARCA
NT seq
4596 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtcgccccagcgtgggtcctcttcgggcttgagccgaccagagctgtggctg
ctgctgtgggcagccgcgtggcgcctgggggccacggcgtgccccgccctctgcacctgc
accggcacgaccgtggactgccacggcacggggctgcaggccattcccaagaacatccca
cggaacaccgagcgcctggagctcaacggcaacaacatcactcggatccacaagaacgac
tttgctgggctcaagcagcttcgagtgttgcagctgatggagaaccagattggagctgtg
gagcgcggagctttcgatgacatgaaggagctggagcgactacggctgaaccgcaaccag
ctgcaagtgctgccggaactactgttccagaacaaccaggctttgtccagactagacctg
agtgagaattctctccaggctgtgcccaggaaagctttccggggagccacagacctcaaa
aatctacagctggacaagaaccagatcagctgcattgaggaaggggccttccgtgcccta
cggggactggaggttctgaccttgaacaacaacaacattaccaccatccctgtgtccagt
ttcaatcatatgcccaagctccggaccttccgcctgcactccaaccacctgttctgtgac
tgtcacctggcctggctctctcagtggctgagacagaggcccaccatcgggctcttcacc
cagtgctccgggcctgccagccttcggggcctcaatgtggcagaggtgcaaaagagcgag
ttcagctgctcaggccagggggaggccgcccaggcaccggcctgcaccctctcttccggt
tcctgcccagccatgtgcagctgtagcaatggcatcgtggactgccgtggcaaaggcctc
actgccatccccgctaaccttcctgagaccatgacggagatccgcctggagctgaatggt
atcaagtccatcccaccaggagccttctctccctatagaaagctgcgcaggatagacctg
agcaacaaccagattgcggagattgcgcccgacgcctttcaaggcctgcgctccttgaat
tccctggtcctctacggcaacaagattacagacctgccccgaggtgtatttggaggcctg
tacaccctccagctgctgcttctgaatgccaacaagatcaactgcatccggcccgatgcc
ttccaggacctgcagaacctctctctgctctccctgtatgacaacaagatccagagcctg
gccaagggcaccttcacctccctgcgggccatccagacactgcatctggcccagaatccc
ttcatctgcgactgtaacctcaaatggctggcagacttcttacgtaccaaccccatcgag
acaactggggcccgatgcgcaagcccccggcgcctcgccaacaagcgtattgggcagatc
aaaagcaagaaatttcggtgctcagccaaagagcagtacttcattccagggactgaggat
taccacctgaacagcgagtgtaccagtgacgtggcctgcccccacaagtgccgttgtgag
gccagtgtggtggaatgctctggcctgaagctctctaagatccctgagcgaatcccccag
tccacgactgagctacgattaaacaacaatgagatttctatcctagaggccactgggttg
tttaagaaactctcgcatctgaagaaaataaacctgagcaacaacaaggtatccgagatc
gaggacgggacgtttgagggtgcggcctctgtcagcgagctgcacctgaccgccaaccag
ctggagtccatcagaagtggcatgttccggggcctagatggcttgcggaccctgatgctg
aggaacaaccgtatcagctgcatccacaacgacagcttcaccgggctgcgtaacgtgcgg
ctcctgtctctttatgacaaccacatcaccaccatctcccctggagccttcgacaccctc
caggccctgtccacactaaacctcctggccaacccattcagctgcaactgccagctggcc
tggctgggagactggcttcggaagaggaagattgtgacagggaaccctcgctgtcagaac
ccagacttcctgcggcagattcctctgcaagatgtggccttccctgacttcaggtgtgag
gaaggccaagaggaggtgggctgcttgccccgcccacagtgcccccaggagtgcacctgc
ctggacaccgtggtccggtgcagcaacaagcacctccaggctctgcccaagggcatcccc
aagaatgtcactgaactctatttggatggcaaccagttcaccttggtcccaggacagctg
tctaccttcaagtatctgcagcttgtggacttgagcaacaacaagatcagttccttaagc
aattcttccttcaccaacatgagccagctgaccacgctgatcctcagctacaacgctctc
cagtgcatccctcctctggccttccaaggacttcgttcgctgcgcctgctgtctttgcac
ggcaatgatgtctctaccctccaagagggcatctttgcagacgtgacgtctctatctcac
ctggccattggagccaaccccctgtactgcgactgccacctccgatggctctctagctgg
gtgaagactggctacaaggaacctggcattgcccgctgtgctgggcctccagagatggag
ggcaaactgttgctcaccacacctgccaagaagtttgaatgccaaggtccccccagtctg
gcagttcaggccaagtgtgatccctgcttgtccagtccatgccagaatcaaggcacttgc
cacaatgacccacttgaggtatacaggtgtacctgccccagtggctacaagggccgaaac
tgtgaggtgtctctggacagctgttccagcaacccatgtggaaacgggggaacctgccgc
gcccgggagggcgaggatgctggcttcacgtgctcctgtccttttggctttgaagggcca
acctgtggagtgaacacagatgactgtgtgaagcacgcctgtgtcaacgggggtgtctgt
gtggatggcatggggaactacacgtgccggtgtcccctgcagtacacgggaagggcctgt
gagcagctggtggacttctgctccccggatctgaacccgtgtcagcatgaggcccaatgt
gttggcaccccggatgggcccaggtgtgagtgtgtgccaggttacacgggtgacaactgc
agcgagaatcaggacgactgcaaggaccaccagtgtcagaacggggcccagtgtgtggac
gaagtcaacagctacgcctgcctctgtgctgagggctacagcggacagctctgtgagatc
ccacctgcccccaggaactcctgtgaggggacggagtgccagaatggagccaactgcgta
gaccagggcagccgggccgtgtgccagtgcctgccaggcttcggtggcccggagtgtgag
aaactgctcagtgtcaactttgtggaccgggacacttacctgcagttcactgacctgcag
gactggccacgggccaacatcactctgcaggtctccacagcagaggacaatgggatcctc
ctctacaatggagacaatgaccacattgcagttgagctgtaccagggacatgtccgtgtt
agctacgacccaggcagctaccccagctctgctatctacagtgctgaaaccatcaacgac
gggcacttccacacagttgagctggtcaccttcgaccagatggtgaacctctccatcgat
ggcggcagccccatgaccatggataacttcggcaagcactacacgctcaacagcgaggcc
cccctctatgtgggagggatgcccgtggacgtgaactcggctgccttccgcctgtggcag
atcctcaatggcacgagcttccacggctgcatccggaacctgtacatcaacaatgaactg
caggacttcaccaagacacagatgaagccgggcgtggtgcccggctgtgagccctgccgc
aagctctactgtctacacggcatttgccagcctaatgccaccccagggcccgtgtgccac
tgcgaggctggctgggggggcctgcactgtgaccagccagtggatggcccctgccatggc
cacaagtgtgtccatgggaaatgtgtgcccctcgatgctcttgcctacagctgccagtgc
caggatgggtactcgggggctctgtgcaaccaggtcggggcggtggcagagccctgtggg
ggcttgcagtgcctgcacggtcactgccaggcctccgccacccaaggggcgcactgtgtg
tgcagcccaggctattcaggcgagctgtgtgagcaagagtccgagtgccggggggaccct
gtccgggactttcaccgggtccagaggggctatgccatctgccagaccacacgcccgctg
tcatgggtggaatgccggggcgcgtgcccgggccagggctgctgccagggtctgcggctg
aagcggaggaagctcaccttcgagtgcagcgatgggacctcgtttgctgaggaggtggag
aagcccaccaagtgcggctgtgcccggtgcgcgtga
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integrated database retrieval system
