Apodemus sylvaticus (European woodmouse): 127693400
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Entry
127693400 CDS
T10613
Symbol
Smg6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
asyl Apodemus sylvaticus (European woodmouse)
Pathway
asyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
asyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
127693400 (Smg6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
asyl03019
]
127693400 (Smg6)
03032 DNA replication proteins [BR:
asyl03032
]
127693400 (Smg6)
Messenger RNA biogenesis [BR:
asyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
127693400 (Smg6)
mRNA cycle factors
Common to processing body (P body) and stress granule
127693400 (Smg6)
DNA replication proteins [BR:
asyl03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
127693400 (Smg6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
PIN_9
DUF5539
Motif
Other DBs
NCBI-GeneID:
127693400
NCBI-ProteinID:
XP_052050190
LinkDB
All DBs
Position
10:complement(48564820..48808062)
Genome browser
AA seq
1417 aa
AA seq
DB search
MAEGLERVRISASELRGILATLAPQAGSRESMKELKEPRQRKDNRRPDLEIYKPGLSRLR
NRPKTKEASGNEEFKDEIVNDRDSSAVGNDTQLIKVCKELDSQQQNGPIDAENSQAQETF
SKTIGLEDRSLKIIKRIKKPDLQIYQPGRRLQTVTKESSGRADEEEILNQVEQLRMEEDE
CKGEAMKEVVNKLDKTEIEKCQSNDRVRTAKGEKGKKIEKGEGSKKVTDDSAQGKPGSVK
RYSRSDKRRSRYRTCSTSSAGSNNSAEGAGLTDNGSRRRRQDRTKERPRLKKQVSMSSTD
SLDEDRVDEPDGLGSRRSSERKKHLERNWSGRGEGEQKSNGKENRGALRVTFDAETMSKD
SPVVKSVKDNVDSMKSDKGPSSGGKGSEKQESRNPKQELRDRGRGILVLPAHTALSVSSS
GSPESTPLGPRLLFGSGSKGSRSWGRGGTTRRLWDPNNPDQKPALKSQTPQLHFLDTDDE
ISPTSWGDSRQAQASYYKFQNSDNPYYYPRTPGPASQYPYTGYSPLQYPVGPTNGMYPGP
YYPGYPASSGQYVCSPLPASTMSPEEIEQHVRNMQQQELHRLLRVADNQELQLSNLLSRD
RISTEGMEKMAQLRTELLQLYERCILLDIEFSDNQNVDQILWKNAFYQVIEKFRQLLKDP
NIENPEQIRNRLLELLDEGSDFFDSLLQKLQVTYKFKLEDYMDGLAIRSKPLRKTVKYAL
ISAQRSMICQGDISRYREQANDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRK
LDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEELNLSPDQWRKGKKST
FRHVGDDTTRLEIWIHPSHSRSSQGTESGKDSEQENGLGSLSPSDLNKRFILSFLHAHGK
LFTRIGMETFPAVAEKVLKEFQALLQHSPSPIGSTRMLQLMTINMFAVHNSQLKDCFSEE
CRSVIQEQAASLGLAMFSLLVQRCTCLLKDSAKAQLSSPEDQEDQDDIKVSSFVPDLKEL
LPSVKVWSDWMLGYPDTWNPPPTSLDLPLQVAVDVWSTLADFCNILTAVNQSEVPLYKDP
DDDLTLLILEEDRLLSGFVPLLAAPQDPCYVEKTSDKVIAADCKRVTVLKYFLEALCGQE
EPLLAFKGGKYVSVAPVPDTMGKEMGSQEGKQLEDEEEDVVIEDFEEDSEAEGSGGEDDI
RELRAKKLALARKIAEQQRRQEKIQAVLEDQSQMRQMELEIRPLFLVPDTNGFIDHLASL
ARLLESRKYILVVPLIVINELDGLAKGQETDHRAGGYARVVQEKARKSIEFLERRFESRD
SCLRALTSRGNELESIAFRSEDITGQLGNNDDLILSCCLHYCKDKAKDYMPTSKEEPIRL
LREVVLLTDDRNLRVKALTRNVPVRDIPAFLTWAQVG
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggggttggagcgtgtgcggatctccgcgtcggaactgcgaggaatcctggcc
actctggctccgcaggccgggagcagagaaagcatgaaggaactaaaggaacccagacag
cgcaaagataataggcgcccagatttggaaatctataagcctggactttctcgactaagg
aacagaccaaaaactaaggaggcttctgggaatgaggaatttaaagatgagattgtgaat
gacagagattcttctgctgttgggaatgatacacagcttattaaagtttgcaaagaattg
gacagccaacagcaaaatggccctatagatgcagaaaatagtcaggcacaggagactttt
tcaaagactattggactagaggaccgaagtctgaaaatcatcaagagaatcaagaaacca
gatctgcagatctaccagcctggaaggcgactgcagactgttaccaaagagtcatcaggc
agggcggatgaagaagagatcctcaaccaagtggagcagttgaggatggaggaggatgag
tgtaagggagaagccatgaaagaagttgtaaacaaactggataaaactgagatagaaaag
tgccaaagtaatgaccgtgtaagaactgccaagggagaaaaggggaaaaagattgaaaag
ggggaggggtcaaagaaggtgactgatgactctgcccaaggaaagcctggctccgtaaag
aggtactccagatcagacaagcgaaggagccgctaccgcacttgcagtaccagctcagct
ggcagcaacaacagtgcggagggagctggcctgactgataatggaagtcgccggcggcgc
caggatcggaccaaggagaggccacgactgaagaagcaggtatccatgtcctcaactgat
tccttagatgaggacagagttgatgagcctgatggattagggtccaggaggagctcagaa
aggaagaagcatttagaaagaaactggtctggacgtggtgagggtgaacagaaaagcaat
ggtaaagaaaaccgaggcgcccttcgtgtcacttttgatgcagaaaccatgagtaaagac
tcccctgttgtgaagtcagtcaaggataatgtagatagtatgaagtctgacaaaggtccg
agcagtgggggtaagggctctgagaagcaggagtcaagaaaccctaaacaagaactccga
gatcgtggtcgtggtattctggttctgcctgcccacactgccctgtctgtcagttcatca
ggttctccagagtctacacctttgggacctcgacttttatttggatctggtagtaaggga
tctcggagttggggccgtggaggcacgacccgccgactatgggacccaaacaatcctgat
cagaagcctgctctgaaaagccagacacctcagctacatttcttggacactgatgatgaa
attagccctacatcttggggtgattcacgtcaggcccaagcatcttactataaatttcaa
aactctgacaacccctattattaccctcgaacaccaggccctgcctctcagtatccctat
acaggctatagccctctgcaatacccagtgggtcctacaaatggtatgtatccagggcct
tactatccaggctatcctgcctcctcaggacaatatgtatgtagccctctccctgctagt
accatgagtcctgaggaaatagaacagcatgtgcggaacatgcagcaacaggagctccat
aggcttctccgagtggctgacaaccaggagctgcagctcagcaacctgctttccagggac
cgcatcagcactgagggcatggagaagatggctcagctcagaactgaactactgcagctg
tacgagcgctgtattctattagatattgaattctctgacaatcagaatgtagatcagatc
ctgtggaagaatgctttctatcaggtgattgagaaattcaggcagcttctcaaggatcca
aatattgagaacccagaacagattcggaacagactcttggagctcttggatgagggcagc
gacttctttgatagtttgcttcagaaactacaggttacttacaagttcaaactggaggac
tacatggatgggcttgctattcgaagcaagcctttacggaaaacagtaaaatatgccttg
atcagtgctcaacgaagtatgatttgccaaggagatatctctaggtatcgggagcaagcc
aacgatacagcaaactatgggaaggctcgcagttggtatctgaaggcccagcacattgct
cccaagaatgggcgcccctataaccagttggctctactggcagtgtatacgaggaggaaa
cttgatgcagtatattactatatgcgcagtttagcagccagcaaccctatcctgactgcc
aaggagagtctcatgagtttatttgaagagactaaacgaaaggccgaacagatggaaaag
aagcagcatgaggaattgaatctgagtcctgatcagtggcgtaaaggaaagaagtctact
ttccggcatgttggggatgacactactcgcctggagatctggattcatccatcacattct
cggtcctcccagggcactgagtctgggaaggattctgagcaggagaatggtctgggcagc
ctgagtcccagtgatctgaacaaaaggttcatcctcagttttctccatgcccatgggaag
ctgtttacccggattgggatggagacattccctgcagtggctgagaaggtgcttaaggag
ttccaagcattgctgcagcatagcccatctcctatcggaagtacccgtatgctgcagctt
atgaccatcaatatgtttgccgtgcataactcccagctgaaagactgcttctcagaggag
tgtcgttctgtgatccaggaacaagctgcatctttgggcttggctatgttttctctactg
gtccagcgctgcacatgcttacttaaggactctgccaaagctcagctgtcctctcctgaa
gatcaagaggaccaagacgacatcaaggtatcttccttcgtcccggacctgaaggagctg
ctccccagtgtgaaagtctggtcagattggatgcttggctacccagacacctggaatcct
ccacccacatcgttggatctgcccttgcaggttgctgtggatgtgtggtcaacactagct
gatttctgtaacatactgactgcagtgaatcagtctgaggtgccactgtacaaggacccg
gatgatgacctcaccctgcttatcctggaagaggatcggcttctctctggctttgtcccc
ttgctggctgcccctcaggacccctgctacgtggagaagacctcggataaggttattgca
gctgactgcaaaagggtcacagtgctgaagtattttctggaagccctttgtggacaagaa
gagcctctgctggcattcaagggtggaaaatatgtgtcagtggcacccgtcccagacacc
atgggaaaggaaatgggaagccaagagggaaaacaactggaagatgaggaagaagatgtg
gtgattgaagactttgaggaagattcagaggctgaaggcagtgggggtgaagatgacatc
agggaacttcgggccaagaagctggctctagcaaggaagatagctgagcagcagcgtcgc
caggaaaagatccaggctgttctggaagaccagagtcagatgaggcagatggagctggag
atccgacccttgttcctcgtaccagataccaacggcttcattgaccacctggccagtctg
gctcggctgctggagagcaggaagtacatcctggtggtgcccctcatcgtgatcaatgag
ctggatggcctcgccaaagggcaggagaccgaccaccgggctgggggctatgcccgtgtg
gtgcaagaaaaggcccgaaaatccattgaattcctcgaacggagatttgagagtcgggac
tcctgcctgcgagccttgaccagccgtggcaatgaacttgaatctatcgccttccgaagt
gaggacattactggacagctgggtaacaacgatgacctgatcctctcctgctgcctgcat
tattgcaaagacaaggctaaggattacatgcccaccagcaaagaggagccaatccgcctg
ctccgggaggtggtgctgctgaccgatgaccgcaaccttcgagtaaaggctctgacgagg
aatgtgcctgtgagggacatcccagccttccttacctgggcccaggtgggctga
DBGET
integrated database retrieval system
