Acetobacter senegalensis: ASN_618
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Entry
ASN_618 CDS
T04217
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
asz
Acetobacter senegalensis
Pathway
asz03030
DNA replication
asz03410
Base excision repair
asz03420
Nucleotide excision repair
asz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
asz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ASN_618 (ligA)
03410 Base excision repair
ASN_618 (ligA)
03420 Nucleotide excision repair
ASN_618 (ligA)
03430 Mismatch repair
ASN_618 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
asz03032
]
ASN_618 (ligA)
03400 DNA repair and recombination proteins [BR:
asz03400
]
ASN_618 (ligA)
Enzymes [BR:
asz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ASN_618 (ligA)
DNA replication proteins [BR:
asz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ASN_618 (ligA)
DNA repair and recombination proteins [BR:
asz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ASN_618 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ASN_618 (ligA)
MMR (mismatch excision repair)
DNA ligase
ASN_618 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ASN_618 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
Transposase_20
Motif
Other DBs
NCBI-ProteinID:
CEF40032
UniProt:
A0A0U5ET83
LinkDB
All DBs
Position
I:578720..580849
Genome browser
AA seq
709 aa
AA seq
DB search
MPPAPPPPACLDRRMTEHLAPTELDAAQAKAELTRLADLIGRYNTAYYTHDAPEVSDAEY
DALRKRYDAIVALHPESEPAESAAQTVGAAPDNAFGKHRHLVPMLSLDNVFDQTEFEAFI
SRATRFLGLSEADAQKLAFVAEPKIDGLSISLTYENGRFVRGTTRGDGTEGEDVTANLLT
LKDLPQQLEGHAPELIEIRGEVFLSKEHFLALNAAQEAIGRKPFANPRNAAAGSLRQLDP
RVTARRPLSLFAYAMGFSSEKQARSHWAYLEQLRAWGFPVNPLSRRLEAASGAEAFFEEI
GRARAALSYDIDGVVYKIDDLTLQERLGFAGRAPRWAVAWKFPAEQAITTLRAIEIQVGR
TGALTPVAHLDPVNVGGVLVMRATLHNEDEIARKDVRPGDTVQIQRAGDVIPQILAVVPP
GPDAPPRAEPFHFPDHCPACGALAVRPEGEAVRRCTGGLTCPAQIVERLIHFVSRNAFDI
EGLGERSIREFYEEGLIHTPADIFRLHSHAESIMKRDGWGEQSVRNLMQAIEARRTIAFS
RFIFALGIRRIGESNARLLARHYGTYENWVAQLRKAAIIGSDERLELGSITGIGSVIADD
LVAFMSEEHNLATLEDLRSFLNITEEEQTSGGPLAGKTVVFTGTLHTLTRQEARAMAERM
GAKVSDSVSKKTDLVILGEKAGSKAKKAAELGIDTLDEAGWNDFCASQG
NT seq
2130 nt
NT seq
+upstream
nt +downstream
nt
atgccgcccgcgccgccgccgccagcctgcttggacagaagaatgactgaacacctcgcc
ccgactgaactggacgccgcacaggccaaagccgaactcacccgccttgcagacctgata
ggccgttacaataccgcctattatacgcatgatgcgcctgaagtgagcgacgctgaatat
gacgccctgcgcaaacgctacgatgccattgtggcgcttcacccggagtctgaaccggca
gaaagtgcagcccagaccgtaggggccgcaccagacaatgcttttggcaagcaccggcat
ctggtgcccatgctctctctggacaacgtgtttgatcagacggaatttgaagccttcatc
agccgcgccacccgttttctggggctgagcgaggcagatgcccagaagctggcctttgtg
gccgaacccaagattgacgggctctccatcagcctgacctatgaaaacgggcgctttgta
cgtggcacaacccgcggcgatggcacggaaggcgaggatgtcaccgccaacctgctcacg
ctgaaggatctaccccagcagcttgaggggcacgcgccggaactgattgaaattcgcggg
gaagtcttcctctccaaagagcattttctggcgctgaacgctgcgcaggaagccattggc
cgcaaacccttcgccaacccacgcaacgcagccgcgggttccttgcggcagcttgaccct
cgcgttaccgcccgccgccctctttctctgtttgcctatgccatgggcttcagttcagaa
aagcaggcccgcagccattgggcatatctggagcagttgcgggcatggggatttccggtc
aatccgctctcccgcaggctggaagcggccagtggtgccgaagctttttttgaagagatt
ggccgtgcccgcgccgcgctgagctacgatattgatggcgttgtttacaagatagatgat
ctgacattgcaggaacgtctgggctttgccggacgcgcgccccgctgggcggtggcgtgg
aagttcccggcagagcaggccattaccaccctgcgggccattgaaattcaggtaggccgc
accggcgctctgacccctgttgcgcatctggaccccgtcaatgtggggggcgtgctggtc
atgcgcgccacgctgcataatgaagacgaaattgcccgcaaggatgtgcggcccggcgat
acggtgcagattcaacgcgcgggtgatgtcattccacaaattctggcggtggtgccaccg
ggcccggatgcaccgccccgtgcggagccgttccatttccctgaccattgccctgcctgt
ggcgcgctggccgtacggccggaaggggaagccgtgcgccgctgcacagggggcctgacc
tgccctgcgcagattgtggagcgacttatccattttgtctcccgcaatgcctttgacatt
gaagggctgggcgagcgcagtatccgcgagttttatgaggaagggctgatccacacccct
gcggatattttccgcctgcacagccatgcggaaagcatcatgaagcgggatggctggggt
gaacagtctgtgcgtaatctgatgcaggccatagaagcgcgccgcaccattgcgttctcc
cgctttattttcgcgctgggaatccgccgcattggcgagagcaacgcccgtctgctggcg
cgccattacggcacgtatgaaaactgggtggcacagttgcgcaaggccgccatcattggt
tcagacgaacggcttgaactgggctccattaccggcattggcagcgtgatcgcggatgat
ctggtggccttcatgagcgaggagcacaaccttgcaacattggaagacctgagatcgttc
ctgaacataacagaggaagaacaaacctctggcgggccgctggcaggcaagaccgtcgtg
tttaccggcaccctgcacaccctcacccggcaggaagcccgcgccatggcggagcggatg
ggggcaaaagtgtctgattccgtctccaaaaaaacggaccttgtcattctgggggaaaaa
gcgggctccaaagccaaaaaagcggcggaactcggcattgatacgctggacgaagccgga
tggaacgatttttgcgcaagtcagggctaa
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