Agrobacterium tumefaciens S33: AWN88_15415
Help
Entry
AWN88_15415 CDS
T04213
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ata
Agrobacterium tumefaciens S33
Pathway
ata03030
DNA replication
ata03410
Base excision repair
ata03420
Nucleotide excision repair
ata03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ata00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AWN88_15415
03410 Base excision repair
AWN88_15415
03420 Nucleotide excision repair
AWN88_15415
03430 Mismatch repair
AWN88_15415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ata03032
]
AWN88_15415
03400 DNA repair and recombination proteins [BR:
ata03400
]
AWN88_15415
Enzymes [BR:
ata01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AWN88_15415
DNA replication proteins [BR:
ata03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AWN88_15415
DNA repair and recombination proteins [BR:
ata03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AWN88_15415
NER (nucleotide excision repair)
GGR (global genome repair) factors
AWN88_15415
MMR (mismatch excision repair)
DNA ligase
AWN88_15415
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AWN88_15415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
RUBY_RBDX
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
AMD59642
LinkDB
All DBs
Position
linear:complement(839634..841808)
Genome browser
AA seq
724 aa
AA seq
DB search
MSKDQKPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDAEYDALKRRNDAIEAN
FPALVRADSPSKKVGFAPLPTFAPIVHARPMLSLDNTFSEEDLRDFVSSVYRFLGHLPDD
SIAFTAEPKIDGLSMSIRYENRRLKTAATRGDGTTGENVTPNIRTIKEIPNELPADAPDV
VEVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTASGSLRQLDANVTAKRKLRFFAYAL
GEVSNGGQPTRIADTQYGIVEKFREWGFPVNPLMKRFTSAQQLLEHYNEIGVARPDLDYD
IDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTPVARL
TPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQVLDVL
LEKRPAGAAKYAFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLKHFVS
RNAFDIEGLGTKQIDFFFESDDPALSIKTAPDIFTLKARQDASHLTKLENIDGFGKVSVR
KLFDAIDARREIDLHRLIFALGIRHVGETTAKLLARSYGTYDHFEESMKAAADPASEAWA
ELNAIDGIGEVVARAIVEFYKEPRNLDVIDRLIRELRPKEAEKPSTEGSPVAGKTVVFTG
SLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKAAELGVQTMDEDEWLA
LIGG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagaccagaaacccgttgaaaacctcaccgagcttgaagcctcttcggagctt
gcatttctggcggccgagcttgcccgccatgacgcgctttaccacggcaaggatgcgccg
gagatttccgatgcggagtatgacgcgctgaagcggcgcaacgacgccatcgaagcgaat
ttcccggcgctggtgcgggccgacagcccatcgaaaaaagtaggcttcgcgccgcttccg
acctttgcgcccatcgtgcatgcgcgaccgatgctgtcgctcgacaatacgttctcggaa
gaagatctgcgcgacttcgtcagttcggtttatcgtttcctcgggcatctgcctgatgac
tccattgctttcactgcggaaccgaagatcgacgggctttccatgtccatccgctacgaa
aaccgcaggctgaagacagcggcgacgcgcggtgacggcacgaccggcgaaaatgtcact
cccaatatcaggaccatcaaggaaattccgaacgagctgcccgccgacgcgcccgatgtg
gtggaagtgcgcggcgaggtctatatggccaaaagcgactttctggcgctcaacgcccag
atggaagcggaaggcaagcagacctacgtgaacccgcgcaatactgcctccggctccctg
cgtcagctggacgccaatgtgacggcgaaacgcaagctgcggtttttcgcctacgccctc
ggcgaggtttcgaatggcggtcagccgacgcggattgctgatacccaatatggcatcgtc
gagaagttcagggaatggggtttcccggttaatccgctgatgaagcgattcacgtccgcc
cagcaattgcttgagcattataatgaaatcggtgttgcgcggcccgatctcgattacgat
atcgacggtgtggtctacaaggtcgaccggcttgatctgcaggaacggcttggcttccgc
tcgcgcagcccgcgttgggcgaccgcacataaatttccagcagagcaagccttcacgacg
gttgaaaatatcgaaattcaggttggccgcaccggcgcgctgacgccggtcgcgcgtctt
acccccatcactgtcggcggtgtcgtcgttaccaatgccacgctgcacaatgccgattat
atcgagggcatcgggaatagcggtgagcgcatccgcccggaagatcacgatattcgcatc
ggcgacactgttatcgtgcagcgggccggcgatgtcattccgcaggttctggacgtgctt
ctggaaaagcgaccggccggggcggcaaaatacgccttcccggaaaaatgtccggtctgc
ggcagccatgcggtgcgggagcgtaatgagaagaccggcaagctcgattcggtcacgcgc
tgcaccggcggtttcgtctgccgggcccaggcagtggagcatctgaaacatttcgtctcg
cgtaatgccttcgatatcgaagggctgggcaccaagcagatcgatttcttcttcgaaagt
gacgatcctgcgctctcgatcaagaccgcacccgacatcttcacgctgaaggcgcgtcag
gatgcttcccatctgaccaagctcgaaaatatcgacggtttcggcaaggtcagcgtcagg
aagctgttcgacgccatcgatgcccgccgcgagatcgatctgcacaggctcatcttcgcg
ctgggcatccgccatgtgggtgagactacggcgaagcttctggcgcgatcctatggcact
tacgaccatttcgaagaaagcatgaaggcggcggcggatcccgcaagcgaggcgtgggcc
gagcttaatgccatcgacggcatcggcgaggtggtggcccgcgccattgtcgagttctac
aaggagccacgcaacctagacgtcatcgatcggctgataagggaacttcgtccgaaagag
gcggaaaagccttctacggaaggcagcccggtggcaggcaagacggtggtgtttaccggc
tcgctggagaagtttacccgcgacgaggcgaaggcccgggcggaaagtctgggcgccaag
gttgccggttccgtttcgaaaaagaccgatattctggtggcggggccgggagcgggctcc
aagcttgccaaggcggcggaactgggcgtgcagaccatggatgaggacgagtggctggcg
ctgatcggcggctga
DBGET
integrated database retrieval system
