Allochromatium tepidum: Atep_22330
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Entry
Atep_22330 CDS
T07447
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
atep
Allochromatium tepidum
Pathway
atep03030
DNA replication
atep03410
Base excision repair
atep03420
Nucleotide excision repair
atep03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atep00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Atep_22330 (ligA)
03410 Base excision repair
Atep_22330 (ligA)
03420 Nucleotide excision repair
Atep_22330 (ligA)
03430 Mismatch repair
Atep_22330 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atep03032
]
Atep_22330 (ligA)
03400 DNA repair and recombination proteins [BR:
atep03400
]
Atep_22330 (ligA)
Enzymes [BR:
atep01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Atep_22330 (ligA)
DNA replication proteins [BR:
atep03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Atep_22330 (ligA)
DNA repair and recombination proteins [BR:
atep03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Atep_22330 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Atep_22330 (ligA)
MMR (mismatch excision repair)
DNA ligase
Atep_22330 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Atep_22330 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
HHH_3
PTCB-BRCT
UPF0758_N
Transposase_20
BRCT_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
BCU07556
UniProt:
A0ABN6GCA6
LinkDB
All DBs
Position
complement(2379738..2381804)
Genome browser
AA seq
688 aa
AA seq
DB search
MTSPDLARRIEALRAEIRRHNHRYYVLDDPEISDAEYDRLFAELQRLEAEHPELITPDSP
TQRVGAEPRPELGEVRHAVPMISLDNAMDDERLVEFHRRLTVALPELDPVFYTAEPKFDG
LAINLRYESGVLVLAATRGDGMRGEDVTHNARTIPNVPLRLLGEDWPEVLEVRGEVYMPR
AGFDRLNARLEERGERPFANPRNAAAGSLRQLDPRVTARRPLRFCAYGWGEFAGETGESQ
FEMLQRLSGWGLPISPELRRVRGLDGCRDYFDDLGRRRATLDYDIDGVVFKLDRLPAQIA
LGATAHHPRWAIARKFPAQEALTEVEAVEFQVGRTGAVTPVARLRPVRVGGVTVSKATLH
NLDEVRRKDVRIGDSVYIRRAGDVIPEIVRVLVERRPEGAGPVELPTRCPVCGSDVIRPE
GEAVARCTGGLWCPAQRKEAIRHFAARRALDIEGLGEKLIEQLVDLEWVREPADLYQLTA
DRLALLERMGEKSAANLIAALEHSKHTTLARFVFALGIREVGETTAQLLAEHFGGIEALM
AASVEDLVAIKGIGPVVAAHIVAFMAQAHNREAITHLLAAGIHWPEVERSDSTSVEPSAA
PLTGKTFVITGTLSRPREEFAARLQELGAKVTASVSKKTDYLLAGTEAGSKLAKAEALGV
AVIDEAGLESLIARLQTPLGEDGRSDTP
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
gtgacgtctcccgacctcgcccggcgcatcgaggcgctgcgcgccgagatccgccggcac
aatcatcgctattacgtactcgacgatccggagatctcggacgccgaatatgatcggctc
ttcgccgaactccagcggctggaagccgaacaccccgagctgatcacgcccgattcgccc
actcagcgcgtcggcgccgagccgcgtccggaattgggcgaggttcggcacgctgtcccc
atgatctcgctcgacaatgcgatggatgacgagcggctggtcgagttccatcgtcgtctc
accgtcgccctgcctgaactcgatcccgtgttctataccgccgaacccaagttcgacggg
ctggcgatcaatctgcgctatgagtccggtgtgctggtgctggccgcgacccgtggcgac
ggcatgcgcggcgaggatgtgacccacaacgcgcggaccatcccgaacgtgccgttgcgg
ctcctgggtgaggactggcccgaggtgctggaggtgcgcggcgaggtctatatgccgcgt
gccggattcgaccggctcaacgcgcgtctggaggaacgcggcgagcgtcccttcgccaat
ccgcgcaatgccgccgccggcagtctgcgtcagctcgatccgcgcgtcaccgcccggcgg
ccgttgcgtttctgcgcctatggctggggtgagttcgcaggcgagacgggcgagagtcag
ttcgagatgctccagcgtctgtcgggttgggggctgccgatctcgcccgagctgcggcgg
gtgagggggctcgacggctgtcgcgactatttcgatgacttgggacggcggcgtgcgacg
ctcgattacgacatcgacggcgtggtcttcaagctcgaccggctgccggcgcagatcgcg
ctcggggccacggcgcatcatccgcgctgggccatcgcgcgcaagtttccggcccaggag
gcgctgaccgaggtcgaggcggtcgagttccaggtcgggcgcacgggggccgtgacgccg
gtggcgcggttgcgtccggtccgggtcgggggcgtgaccgtttccaaggcgacgctgcac
aatctcgacgaggtgcggcgcaaggacgtgcgcatcggcgacagcgtctatattcgccgc
gcgggtgatgtgattcccgagatcgtgcgggtgctcgtcgagcggcgtccggagggggca
gggccggtcgagctgccgacccggtgtccggtctgcggttcggacgtgatccggccggag
ggcgaggcggtcgcgcgctgtaccggcgggctctggtgtccggcccagcgtaaggaggcg
atccggcattttgccgcgcgccgggcgctggacatcgaggggctaggggagaagctcatc
gaacagctcgtcgatctggagtgggtgcgcgagccggcggatctctatcaactgaccgcc
gaccggttggccctgttggagcgtatgggcgagaagtcggcggccaatctgatcgcggcg
ctggagcacagcaagcacacgaccctagcccgcttcgtcttcgcgctcggcatccgcgag
gtcggcgagaccacggcgcagttgctggcggagcacttcggcggaatcgaggcgctgatg
gcggcgagcgtcgaggatctggtcgcgatcaagggcatcgggcctgtggtggcggcgcat
atcgtcgctttcatggcccaggcgcacaatcgcgaggcgatcacgcatctgctggcggcg
gggattcactggcccgaggtcgagcggtccgattcgacgtccgtcgagccgagcgcggcg
cccctgaccggcaagaccttcgtcatcaccggtacgctgagtcgtccgcgtgaggaattc
gcggcacggttgcaggagcttggtgcgaaggtgacggctagtgtttccaagaagaccgat
tatctgctggcgggcacggaggccggctcgaagctcgccaaggccgaggcgttgggtgtg
gccgtgatcgacgaggccggactcgaatccttgatcgcgcggctccagacgccacttggg
gaggatggccgttcagacacaccgtaa
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