Aquincola tertiaricarbonis: MW290_19775
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Entry
MW290_19775 CDS
T08158
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ater
Aquincola tertiaricarbonis
Pathway
ater03030
DNA replication
ater03410
Base excision repair
ater03420
Nucleotide excision repair
ater03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ater00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MW290_19775 (ligA)
03410 Base excision repair
MW290_19775 (ligA)
03420 Nucleotide excision repair
MW290_19775 (ligA)
03430 Mismatch repair
MW290_19775 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ater03032
]
MW290_19775 (ligA)
03400 DNA repair and recombination proteins [BR:
ater03400
]
MW290_19775 (ligA)
Enzymes [BR:
ater01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MW290_19775 (ligA)
DNA replication proteins [BR:
ater03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MW290_19775 (ligA)
DNA repair and recombination proteins [BR:
ater03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MW290_19775 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MW290_19775 (ligA)
MMR (mismatch excision repair)
DNA ligase
MW290_19775 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MW290_19775 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
DUF4796_N
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
URI11200
UniProt:
A0ABY4SF46
LinkDB
All DBs
Position
2:1202768..1204822
Genome browser
AA seq
684 aa
AA seq
DB search
MSAPVTPEQRAAELRRLLQAHAHAYYVLDAPTIPDAEYDKLFQELQALEAAHPELLTPDS
PTQRVIGAVLDGLTPVRHTVPMLSIKTETDTTAAGAVKFDTSVRNALKLTEADPPVRYCA
ELKFDGLAINLRYEAGELVQAATRGDGETGEDVTHTIRTIAAIPKRLKRCNAPVLEVRGE
VFMRRDAFEALNERQREAGAKTFVNPRNAAAGVVRQLDANIARQRPLAFFAYGLGDVQGW
DVPATHSGTLDALATLGLPVNDDRAVEAGADGLAAFHQRIAAQRDALPFDIDGVVYKVDD
RALQQQLGFKTREPRWAVAHKYPAQEQVTVLRAIDIQVGRTGKLTPVAKLEPVFVGGTTV
SNATLHNVFELRRKGVRVGDQVIVRRAGDVIPEVVGRVPGERAGYVPNFRMPRQCPVCGS
AVLRERGGIDHRCTGGLFCAAQRKQALLHFAGRRAMDIEGLGDKLVDQLVDGGLIRTLPE
LYKLGVAKLSALDRMADKSAANLVQALDKSKQTTLPRFLYALGIRHVGETTAKDLARHFG
QLDKVMDATYEQLLEVPDVGPVVAQSIRTFFEQPHNREVAEQLRAAGVTWPEHEGAELAA
PKPLAGQTFVLTGTLPTLTRDEAKELLEAQGAKVAGSVSKKTNYVVAGEEAGSKLDKAQQ
LGITILDEAGLRDLLAAAGAAPDA
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccccggttacccctgaacaacgcgccgccgagctgcggcgcctgctgcaagcg
catgcccacgcctactacgtgctggatgcgcccaccatccccgacgctgaatacgacaag
ctgttccaggagctgcaggccctcgaggccgcgcaccccgaactgctgacgccggattca
cccacccagcgcgtgatcggcgcggtgctggacggcctgacgccggtgcgccacaccgtg
ccgatgctgtcgatcaagaccgagaccgacaccaccgccgccggtgcagtcaagttcgac
acttcggtgcgcaatgcgctcaagctcaccgaagccgacccaccggtgcgctactgcgcc
gaactcaagttcgacggcctggccatcaacctgcgctatgaagccggcgagctggtgcag
gccgccacccgcggcgatggcgagaccggcgaggacgtgacccacaccatccgcaccatc
gccgccatcccgaagcggctcaagcgctgcaacgcgccggtgctggaagtgcgtggcgag
gtgttcatgcgccgcgacgccttcgaggcgctgaacgagcgccagcgcgaggccggtgcc
aagaccttcgtcaacccgcgcaatgccgcggccggcgtggtgcgccagctcgatgccaac
atcgcccgccagcggccgctggccttcttcgcctacggcctgggcgacgtgcagggctgg
gacgtgccggccacccactcgggcacgctggatgcgctggccaccctgggcctgccggtg
aacgacgaccgggcggtggaagcgggcgccgacggcctggccgccttccaccagcgcatt
gccgcgcagcgcgatgcgctgcccttcgacatcgacggcgtggtctacaaggtggacgac
cgcgcgctgcagcagcagctgggcttcaagacccgcgagccgcgctgggcggtggcccac
aagtaccccgcgcaggaacaggtgacggtgctgcgggccatcgacatccaggtgggccgc
accggcaagctcacgcccgtggccaagctggagccggtgttcgtgggcggcaccacggtg
agcaatgccacgctgcacaacgtgttcgagctgcgccgcaagggcgtgcgggtgggcgac
caggtgatcgtgcgccgcgctggcgacgtgattcccgaggtggtgggccgcgtgcccggt
gagcgcgccggctacgtgcccaacttccgcatgccgcgccaatgcccggtgtgcggcagc
gcggtgctgcgtgagcgcggcggcatcgaccaccgctgcaccgggggcctgttctgcgcc
gcgcagcgcaagcaggcgctgctgcactttgccggccggcgggcgatggacatcgaaggt
ctgggcgacaagctggtcgaccagctggtggacggtggcctgatccgcaccctgcccgag
ctgtacaagctgggcgtggccaagctctcggccctggaccgcatggccgacaagagcgcc
gccaacctggtgcaggcgctggacaagagcaagcagaccacgctgccgcgctttttgtat
gcgctgggcatccgccacgtgggggaaaccaccgccaaggacctggcgcgccacttcggc
cagctggacaaggtgatggacgccacttacgagcagctgttggaggtgcccgacgtgggc
ccggtggtggcgcaaagcatccgcaccttcttcgagcagccccacaaccgcgaggtggcc
gagcagctgcgcgcggctggtgtcacctggcccgagcatgagggcgccgaactggccgcg
cccaagccgctggccggccagaccttcgtgctcaccggcacgctgcccacgctgacgcgc
gacgaggccaaggagctgctggaggcgcagggcgccaaggtggccggctcggtctcgaag
aagacgaactacgtggtggccggtgaagaagccggcagcaagctggacaaggcccagcaa
ctgggcatcaccatcctcgacgaagccggcttgcgggacctgctggccgcggccggcgcc
gcgcctgacgcctga
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integrated database retrieval system
