Agrobacterium tumefaciens Ach5: Ach5_19700
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Entry
Ach5_19700 CDS
T03816
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
atf
Agrobacterium tumefaciens Ach5
Pathway
atf03030
DNA replication
atf03410
Base excision repair
atf03420
Nucleotide excision repair
atf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Ach5_19700
03410 Base excision repair
Ach5_19700
03420 Nucleotide excision repair
Ach5_19700
03430 Mismatch repair
Ach5_19700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atf03032
]
Ach5_19700
03400 DNA repair and recombination proteins [BR:
atf03400
]
Ach5_19700
Enzymes [BR:
atf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Ach5_19700
DNA replication proteins [BR:
atf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Ach5_19700
DNA repair and recombination proteins [BR:
atf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Ach5_19700
NER (nucleotide excision repair)
GGR (global genome repair) factors
Ach5_19700
MMR (mismatch excision repair)
DNA ligase
Ach5_19700
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Ach5_19700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
RNA_ligase
RUBY_RBDX
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
AKC07746
LinkDB
All DBs
Position
circular:complement(2006156..2008330)
Genome browser
AA seq
724 aa
AA seq
DB search
MSKDQIPVENLTELEASSELAFLAAELSRHDALYHGKDAPEISDADYDALKRRNDAIEAA
FPALVRADSPSKKVGFTPLPTFAPIVHARPMLSLDNTFSEGDLRDFVSSVYRFLGHLPDD
SIAFTAEPKIDGLSMSIRYENGKLKTAATRGDGTTGENVTANIKTIKEIPNELPADVPDV
VEVRGEVYMAKSDFMALNAQMEADGKQTYVNPRNTASGSLRQLDANVTAKRKLRFFAYAL
GEVSNGGQPTRIADTQYGIVEKFREWGFPVNPLMKRFTSAEQLLEHYNEIGVARPDLDYD
IDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTPVARL
TPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQVLDVL
LEKRPAEAVKYAFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLKHFVS
RNAFDIEGLGTKQIDFFFESEDPALSIKTAPDIFTLKARQEASHLTKLENIDGFGKVSVK
KLFDAIDARREIDLHRLIFALGIRHVGETTAKLLARSYGTYEHFEEAMKAAADPASDAWA
ELNSIDGIGEVVARAIIEFYKEPRNLDVIDRLIRELRPKEAEKPSTEGSPVAGKTVVFTG
SLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKAAELGVQTMDEDEWLA
LIGG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagaccagattcccgtcgaaaacctgaccgagcttgaggcctcttccgagctg
gcatttctggcagccgagctttcccgccacgatgcgctttatcatggcaaggacgcgccg
gaaatttcggacgcggactacgatgcgctgaagcggcgcaacgatgccatagaggcggct
ttcccggcgctggtgcgggccgacagcccttcgaagaaagtcggcttcacgccgcttccc
accttcgcgcccatcgtgcatgcgcggccgatgctgtcactcgacaatacgttttctgaa
ggtgatctgcgcgatttcgtcagttcggtttaccgcttccttgggcacctgccggatgat
tcgattgcctttaccgctgagccgaagatcgacggactttccatgtccatccgctacgag
aacggcaagctgaagacggcggcaacacgtggcgacggcacgacgggcgagaacgtcacc
gccaatatcaagaccatcaaggaaattccgaacgagctgcctgccgatgtacccgatgtg
gtagaggtgcgcggcgaagtttatatggccaagagcgacttcatggcgctcaatgcccag
atggaggccgatggcaagcagacctatgtgaacccgcgcaacacggcctccggttcgctg
cgccagcttgacgccaatgtgacggcgaaacgcaagctgcggttctttgcctatgcgctt
ggcgaggtctccaatggcggccagccgacgcggattgccgacacgcaatatggtatcgtc
gagaaattccgggaatggggtttcccggtcaatccgctgatgaagcgattcacctctgcc
gaacaattgcttgaacattataatgaaatcggagtcgcgcgacccgatctcgattatgat
atcgacggcgtggtctacaaggtcgaccggcttgaccttcaggaacggctgggtttccgt
tcgcgcagcccgcgctgggccaccgcacacaagtttccggcagaacaggccttcaccacg
gtcgagaacattgaaatccaggtagggcgcaccggcgcgctgacaccggttgcgcgtctc
accccgattaccgtcggcggcgtcgtcgtcaccaatgcgacgctacacaatgccgattac
atcgagggtatcggcaatagcggcgagcgcattcggcccgaggatcatgatatccgcatt
ggcgatactgtcatcgtgcagcgtgcaggcgatgtcattccgcaggtgctggatgtgctt
ctggagaagcgcccggctgaggcggtgaaatatgcgtttccggagaaatgtcctgtgtgc
ggcagccatgcggtgcgggagcgcaacgaaaagaccggtaagctcgattcggtcacgcgc
tgcaccggcggtttcgtctgcagggcgcaggcggtcgagcatctgaaacatttcgtttcg
cgcaatgccttcgatatcgaggggttgggtaccaagcagatcgatttcttcttcgaaagc
gaggatccggccctctccatcaagaccgcgcctgatattttcacgctgaaggcgcgtcag
gaggcatcgcatcttaccaagctcgaaaacatagatggcttcggcaaggtcagcgtcaag
aaactgttcgatgccatcgatgcccgccgcgagatcgatctgcatcggcttatcttcgct
ctcggcattcgtcatgtcggtgaaaccacggcgaagcttctggcgcgttcctatggcacc
tatgagcatttcgaggaagccatgaaggcggcagccgacccggcgagcgatgcctgggcc
gaactcaacagtatcgatggcatcggcgaggtcgtggcgcgcgccatcatcgaattctac
aaggaaccgcgcaatctcgatgtcatcgaccggctgatacgggagctgcggccgaaggag
gccgagaagccctcgaccgaaggcagcccggtggcgggcaagacggtggtctttaccggg
tctctggaaaaattcacgcgcgacgaggccaaggcccgtgcggaaagtctgggcgccaag
gtggccggctccgtatcgaagaagacggatattctggtggccgggccgggggcaggttcc
aagcttgccaaggcggcggagctgggcgttcagaccatggacgaggacgagtggctggcg
ctgatcggtggctga
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integrated database retrieval system
