Acinetobacter towneri: J4G44_05400
Help
Entry
J4G44_05400 CDS
T07268
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
atg
Acinetobacter towneri
Pathway
atg03030
DNA replication
atg03410
Base excision repair
atg03420
Nucleotide excision repair
atg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
J4G44_05400 (ligA)
03410 Base excision repair
J4G44_05400 (ligA)
03420 Nucleotide excision repair
J4G44_05400 (ligA)
03430 Mismatch repair
J4G44_05400 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atg03032
]
J4G44_05400 (ligA)
03400 DNA repair and recombination proteins [BR:
atg03400
]
J4G44_05400 (ligA)
Enzymes [BR:
atg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
J4G44_05400 (ligA)
DNA replication proteins [BR:
atg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
J4G44_05400 (ligA)
DNA repair and recombination proteins [BR:
atg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
J4G44_05400 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
J4G44_05400 (ligA)
MMR (mismatch excision repair)
DNA ligase
J4G44_05400 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
J4G44_05400 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DNA_pol_lambd_f
Motif
Other DBs
NCBI-ProteinID:
QTD60055
LinkDB
All DBs
Position
1135556..1137592
Genome browser
AA seq
678 aa
AA seq
DB search
MSVDLTVVAQMRQLIQLLAKHNHAYYVMDQPTIADSEYDQLFHQLKALEQQYPDLVQPDT
PTNKVGGTPLAKFTTVTHAVPMLSLGNVFNQEELFAFARRVEERLPNQNIEYDVELKFDG
LAISLWYEHGVLVRGVTRGDGETGEDITHNVKTIRNLPKVLSATETAIPEFLEVRGEVLM
PKLGFEKLNAANTAKGEKTFANPRNAAAGSLRQLDPNIAASRPLAFYAYGIAQCVPPHGQ
STMSDSLAWLGQFGFEIGERHFVCKSIQDVQAAYEQINLERPNLSVEIDGMVVKVNDLKQ
QQQLGFLSREPRWATAYKFPAVAALTTIENIDWQVGRTGTLTPVARLNPVAVGGVTVSNV
TLHNIGEIHRLDVRLGDTVSVYRSGDVIPKVEKVWPEFRLADAQEVHLPEQCPVCDSPVV
MPEGEALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGDRWVESLLHLNLLQNVADIYH
LHEHRDTLLGIEKMGEKSVQNLIDSIENSKKTTLAAFIYALGIRGVGETTARMLANTFQT
LEALREADLEALKKTPDVGDITAEWILDFFQAPHNLEVLDRLLAAGIHWDAPIAPTRQPL
NGESWVITGTLSQMGRDEATQLLQALGARVSGSVSGKTKCVVAGEKAGSKLEKAEKLGVQ
VMNEAEFIQLMQEYGVLE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtagatttaaccgtcgtggcacaaatgcgtcaattgattcaactgcttgccaag
cacaatcatgcctattatgtgatggatcaaccgacaattgcagacagtgaatatgatcag
cttttccatcaactaaaagcgttggaacaacagtatccagatttagttcaacccgataca
ccgaccaataaagtcggtggcacacctttggcaaagttcaccacggttacacatgctgtg
ccaatgttgtctttaggcaatgtgtttaatcaggaagaattatttgcctttgcaagacgt
gtcgaagagcgtttgcccaaccaaaatattgaatacgatgtcgaactcaaatttgatggt
ttggcgatttcactttggtatgaacatggtgttttagtgcgtggtgtgacccgtggtgat
ggggaaacaggggaagacattacccacaacgtcaaaactatccgcaatttaccgaaagtt
ttgagtgcgacagaaacggctattcctgaatttttggaagtgcgtggtgaagtgttgatg
ccaaaacttggttttgaaaaactcaatgcggccaatacagccaaaggtgaaaaaaccttt
gccaatccacgcaatgcagcagcaggcagtttgcgtcagttagacccgaatattgcggct
tcacgtcctttagcattctatgcttatggcattgcgcaatgtgtgccgcctcatggacaa
agcaccatgtccgacagtttggcatggttggggcagtttggttttgaaattggcgaacgt
cattttgtctgcaagagcattcaagatgttcaggcggcctatgagcaaattaaccttgag
cgtccgaatttaagcgttgaaattgatggcatggtggtcaaggtcaatgacttgaaacag
caacagcaattgggctttttaagtcgtgagccgcgctgggcgactgcctataaattccct
gcagttgccgctttaaccaccattgaaaatattgattggcaagtggggcgcacaggtacg
ttgacgcctgtggcacgtttaaaccccgttgcggtaggtggtgtgacggtatccaatgtt
actttgcataatattggtgaaattcaccgtttggatgtgcgtttaggcgatacggtcagt
gtttaccgtagtggtgatgtgattcccaaagttgaaaaagtctggcctgaatttcgcctt
gccgatgcgcaagaagtgcatttacctgaacaatgccctgtgtgtgattcgcctgtggtg
atgcctgaaggtgaggctttggcgcgttgttcaggcggtttgtattgtgcggcacagcgt
attgaagcgattcgtcattttgtgtcacgtaaagccatggatattgaaggtttgggtgat
cgttgggtggagtcattactgcatctgaacttgctacaaaatgtggctgatatttatcat
ttacacgaacaccgcgacactttgctcggcattgaaaaaatgggtgagaagtcggttcaa
aacttgattgactcgattgaaaacagcaaaaaaactactttggctgcgtttatttatgcc
ttgggaattcgtggtgtgggcgaaaccaccgcgcggatgcttgccaatacttttcagact
ttagaggctttgcgtgaagctgatttagaagcgttaaagaaaactccagatgtgggagat
attacggcagaatggattttggactttttccaagcgccgcataatttagaagtgttggat
cgtttattagctgcaggcattcattgggatgctccgattgcaccgacacgtcagcctttg
aatggtgaaagttgggtgattacagggacgttgagccaaatgggacgcgatgaagcgact
cagttgttgcaggctttgggtgcacgggtgagtggtagtgtttcgggtaaaaccaaatgt
gtcgtggcgggtgagaaagctggctcaaagctggaaaaagccgagaagttgggtgtgcaa
gtcatgaatgaagctgagtttattcagctgatgcaggaatatggtgtgcttgaataa
DBGET
integrated database retrieval system
