Arabidopsis thaliana (thale cress): AT1G03905
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Entry
AT1G03905 CDS
T00041
Symbol
ABCI19
Name
(RefSeq) P-loop containing nucleoside triphosphate hydrolases superfamily protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT1G03905 (ABCI19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G03905 (ABCI19)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
AT1G03905 (ABCI19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
nSTAND3
AAA_29
AAA_25
ORC-CDC6-like
SMC_N
AAA_28
AAA
NACHT
AAA_23
AAA_15
AAA_18
AAA_5
SRP54
AAA_30
PduV-EutP
AAA_33
Zeta_toxin
AAA_24
DLIC
AAA_22
Arf
AAA_16
AAA_14
AAA_13
VapE-like_dom
Motif
Other DBs
NCBI-GeneID:
839376
NCBI-ProteinID:
NP_563694
TAIR:
AT1G03905
UniProt:
Q3EDJ0
A0A178WBN4
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All DBs
Position
1:993400..995989
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AA seq
290 aa
AA seq
DB search
MAEKDATASGDDAIRVSGMQFAYEVEDPIFFDFNLDLPAGSRCLLVGANGSGKTTLLKIL
AGKHMVGGKNVVQVLSRSAFHDTQLVCSGDLSYLGGSWSKTVGSAGEVPLQGDFSAEHMI
FGVEGTDPVRREKLIDLLDINLQWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLD
VVARMDLLEFFKEECDQRGATIVYATHIFDGLETWATHLAYIQDGELNRLSKMTDIEELK
TSPNLLSVVESWLRSEIKLVKKKKKPVAPWKPSPFDNSPFRSSRHMAYYR
NT seq
873 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaaagatgcgacggcgagtggcgatgacgccattagagttagcggtatgcaa
ttcgcatacgaagttgaggatccaatattcttcgacttcaacctcgatcttccagctggt
tctcgctgtcttctggttggtgccaatggatctggcaagacaaccttattgaagattctg
gctggaaagcatatggtgggaggaaagaacgttgtacaagttcttagccgctcggctttc
catgatactcaacttgtttgcagtggtgacttgtcttaccttggaggatcatggagtaaa
accgttggttcagctggagaggttcctctccagggagatttctcagcagaacatatgata
tttggagttgaaggaactgatcccgtgagaagagaaaaactgattgatcttcttgatatc
aatcttcaatggcgtatgcataaggtttctgatgggcagaaacggcgcgtgcagatatgt
atgggactcttacatccattcaaggtgttattactcgatgaggtcactgttgacctagac
gtcgttgcaaggatggatttgctggaattcttcaaagaagaatgtgatcagagaggagct
acaatcgtgtatgcaactcacatattcgacgggctagagacatgggcgacacatttggcc
tacattcaggacggtgagctgaatcgtttatcgaaaatgacagatattgaggagctgaaa
acttcacccaacctcctctccgtggtagaatcttggctccgttctgaaatcaaactcgtg
aagaagaagaagaagcctgtggcgccatggaaaccatctccattcgataactctcctttt
agatcatcgagacacatggcttattaccgatga
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