Arabidopsis thaliana (thale cress): AT1G54490
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Entry
AT1G54490 CDS
T00041
Symbol
XRN4
Name
(RefSeq) exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
AT1G54490 (XRN4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G54490 (XRN4)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
AT1G54490 (XRN4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
841891
NCBI-ProteinID:
NP_175851
TAIR:
AT1G54490
UniProt:
Q9FQ04
A0A384KRW9
Q17Q78
LinkDB
All DBs
Position
1:20350109..20356916
Genome browser
AA seq
947 aa
AA seq
DB search
MGVPAFYRWLADRYPKSISDVVEEEPTDGGRGDLIPVDITRPNPNGFEFDNLYLDMNGII
HPCFHPEGKPAPATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLRKDFEMEGQILSAKEKAETCDSNVITPGTPFMAILSVALQYYIQ
SRLNHNPGWRYVKVILSDSNVPGEGEHKIMSYIRLQRNLPGFDPNTRHCLYGLDADLIML
SLATHEVHFSILREVITYPGQQEKCFVCGQTGHFASDCPGKSGSNNAAADIPIHKKKYQF
LNIWVLREYLQYELAIPDPPFMINFERIIDDFVFLCFFVGNDFLPHMPTLEIREGAINLL
MHVYRKEFTAMGGYLTDSGEVLLDRVEHFIQAVAVNEDKIFQKRTRIKQSMDNNEEMKQR
SRRDPSEVPPEPIDDKIKLGEPGYKERYYAEKFSTTNPEETEQIKQDMVLKYVEGLCWVC
RYYYQGVCSWQWFYPYHYAPFASDLKNLPDLEITFFIGEPFKPFDQLMGTLPAASSNALP
GEYRKLMTDPSSPILKFYPADFELDMNGKRFAWQGIAKLPFIEEKLLLAATRKLEETLTV
EEQQRNSVMLDLLYVHPAHPLGQRILQYYHFYQHMPPHECLPWMIDPNSSQGMNGFLWFS
ERNGFQTRVDSPVNGLPCIEQNRALNVTYLCPAKHSHISEPPRGAIIPDKILTSVDIKPF
PPLWHEDNSNRRRQARDRPQVVGAIAGPSLGEAAHRLIKNTLNMKSSTGAASGLIDPNGY
YRNVPGNYSYGGVNRPRAPGPSPYRKAYDDDSSYYYGKYNNSTQGTFNNGPRYPYPSNGS
QDYNRNYNSKIVAEQHNRGGLGAGMSGLSIEDNGRSKQLYSSYTEAANANLNPLPSPPTQ
WIGTQPGGNFVGGYYRDGVGYSETNGKSVKKVIYQAKTQPSHRGANL
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgggagtaccggcgttctacagatggctcgctgaccgatacccgaagtcaattagtgac
gtcgttgaagaagaacctaccgatggaggtcgtggtgaccttattcctgttgatatcacc
agacctaaccctaacggcttcgaatttgataatttgtatctcgatatgaatggtatcatt
catccttgtttccatcctgaaggaaagcctgcacctgccacgtacgatgatgtatttaaa
tcaatgtttgagtacattgaccatctttttactttagtgcgtccgaggaagattctttat
ttggctatagatggagttgcgccgagagcaaagatgaatcagcagcgttctcgacgtttc
agagctgcaaaggacgcagcagaggctgaagctgaggaagagaggttgagaaaagatttt
gagatggagggccaaatcttgtccgctaaagagaaagctgaaacctgtgattcaaatgtc
attactcctgggaccccttttatggctatactgtcagtcgctcttcagtattacatccaa
tctaggttaaaccataaccctggctggagatatgttaaggtaattctttctgattcaaat
gttccgggagaaggagaacacaagataatgtcatacattcgtctccaacgtaatcttcct
ggttttgatccaaatacacggcattgtctatatggtctggatgcagatttgataatgctc
tccttagctacacatgaagttcacttttccatcttaagagaggttatcacttaccctggg
cagcaagagaaatgctttgtgtgtggacaaactggccactttgcttcagattgccctgga
aaatcaggtagcaataatgcagcagctgatattccaatccacaagaaaaaatatcagttc
ctgaacatttgggtgttgcgagaatatctgcaatatgaattggccattccagatcctcct
tttatgatcaactttgagagaataatagacgactttgtattcctttgcttttttgttggt
aatgacttcctacctcatatgcctacactggaaattcgagagggggctataaacttgctg
atgcatgtttacagaaaggagtttacagctatgggaggctatctaacagattctggtgag
gttttactagatagggtagagcatttcattcaagctgtcgctgtaaatgaagataaaata
tttcagaaaagaacgcggataaaacagtcaatggataacaatgaagaaatgaagcaaaga
tctagaagggacccatctgaggtaccacctgaaccgatagacgataagattaaattagga
gaaccaggctacaaggagaggtattatgctgagaaatttagtacgaccaatccagaggaa
actgagcaaatcaaacaagacatggtactgaaatatgttgaaggtttgtgctgggtttgc
cggtactactaccaaggtgtatgctcttggcaatggttttacccataccattatgctcca
tttgcttcagatcttaagaatctacctgatttagaaatcacattttttattggagagccc
tttaaaccttttgaccagttaatgggaaccctgccggctgcaagctcaaatgcgctgcct
ggagaataccggaagttgatgactgatccctcatccccgatacttaaattttaccctgct
gattttgagcttgacatgaatggaaagcgcttcgcctggcagggtattgcaaaacttcct
ttcattgaggagaaattattgttagctgctacaaggaagcttgaagaaactctaacggtg
gaagaacaacaacgcaacagtgtgatgcttgatttgttatacgtacaccccgctcatcca
ctgggccagcggattctgcagtactatcatttctaccagcacatgccaccacatgaatgt
cttccatggatgattgacccgaattctagccaaggaatgaacggttttctttggtttagt
gaaaggaatggtttccaaactagagtggattcccctgtcaatggtttgccatgcattgag
cagaaccgagccttaaatgttacatacctgtgtcctgccaaacactctcatatctcagaa
ccacccagaggagcgatcattccggacaagatcttgacgtcagtagatataaagccattt
cctcctttatggcatgaagacaatagcaaccgacgccgacaagcccgagataggccgcaa
gtggttggagctatagcagggccttctctgggagaagcagctcatcgtctgatcaaaaac
acccttaacatgaaatcctctactggtgcggcttcgggattaattgacccaaacggatac
taccgaaatgtaccgggtaattattcttatggtggagtcaatagaccaagagcaccgggt
ccgtctccttaccggaaagcttatgacgatgactcgagctattactatggaaagtataac
aatagcacacagggaacgtttaacaatggtccaagatatccttatccatcaaatgggtca
caagactataaccggaactacaactccaagatagtagcagaacagcacaaccgtggtgga
cttggagctggaatgtctggtttatcgatagaagataacggcagaagcaaacaattgtat
tcaagttatacagaagctgctaatgcaaatttgaacccgttgccatcaccccccacccaa
tggatcggtacacagccaggtggtaattttgtcggtggatactatagggatggagttggg
tacagtgaaacaaatggaaaatcggtaaagaaagtaatttaccaggccaagacacaacca
agtcatcgaggtgcaaacttgtga
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