Arabidopsis thaliana (thale cress): AT1G76860
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Entry
AT1G76860 CDS
T00041
Symbol
LSM3B
Name
(RefSeq) Small nuclear ribonucleoprotein family protein
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
ath03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AT1G76860 (LSM3B)
09123 Folding, sorting and degradation
03018 RNA degradation
AT1G76860 (LSM3B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT1G76860 (LSM3B)
03041 Spliceosome [BR:
ath03041
]
AT1G76860 (LSM3B)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AT1G76860 (LSM3B)
mRNA degradation factors
5'-3' decay
Lsm complex
AT1G76860 (LSM3B)
Spliceosome [BR:
ath03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
AT1G76860 (LSM3B)
Complex C
U2 snRNP components
AT1G76860 (LSM3B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
TIG_SUH
Motif
Other DBs
NCBI-GeneID:
844021
NCBI-ProteinID:
NP_177812
TAIR:
AT1G76860
UniProt:
Q9C6K5
A0A178WQ75
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All DBs
Position
1:complement(28854414..28855750)
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AA seq
98 aa
AA seq
DB search
MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE
IDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLRTAA
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcgaggaagaagccaccgtgagggagccactagatctgattaggctgagtctc
gacgagagaatctatgtcaagctccggtcagaccgcgaacttcgcggcaagcttcacgcg
tttgatcagcatttgaatatgattctgggtgatgttgaagaaactatcactacagtagaa
atcgatgacgagacatatgaagagattgttcggactacaaagcggacgattgagtttcta
ttcgtgagaggagatggagtgatattggtgtctccaccgctgaggacagcagcctga
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