Arabidopsis thaliana (thale cress): AT5G02270
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Entry
AT5G02270 CDS
T00041
Symbol
ABCI20
Name
(RefSeq) non-intrinsic ABC protein 9
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
ath
Arabidopsis thaliana (thale cress)
Pathway
ath03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AT5G02270 (ABCI20)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ath03019
]
AT5G02270 (ABCI20)
Messenger RNA biogenesis [BR:
ath03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
AT5G02270 (ABCI20)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_15
AAA_29
Arf
AAA_23
ORC-CDC6-like
nSTAND3
AAA
AAA_30
Zeta_toxin
AAA_7
Motif
Other DBs
NCBI-GeneID:
831709
NCBI-ProteinID:
NP_195847
TAIR:
AT5G02270
UniProt:
Q9LZ98
A0A5S9Y0N5
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Position
5:complement(467038..469272)
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AA seq
328 aa
AA seq
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MAVTEEEKKRNSTVEISGLRFTYPGIDGHPPPGSKPLIEDFSITLNSSDRCLLVGSNGAG
KTTILKILGGKHMVEPHMVRVLGRSAFHDTGLTSSGDLCYLGGEWRRDVAFAGFEVPIQM
DISAEKMIFGVAGIDPQRRDELIKVLDIDISWRLHKVSDGQRRRVQICMGLLKPFKVLLL
DEITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPTHIVYVANGKLQLALP
MEKVKETSKKSLMRTVESWLRKERDEERKRRKERKANGLPEFETRTEESRVTGDPARMLN
NGWAAGRLHSTVAGGEDNFVLSSNRVLR
NT seq
987 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgacggaggaggagaagaagcggaattcaacggttgagatctccggattacgt
ttcacgtatcctggaatcgacggtcatccaccaccgggatcgaaaccacttattgaagat
ttctcaatcacgcttaattccagcgatcggtgtctcctcgtcggatctaatggcgctggg
aaaacgacgattctgaagatattgggagggaaacacatggtggagccgcatatggttagg
gttctgggtcgctcggcgtttcatgatactggattgacctcttctggtgatctctgttat
ctcggtggcgagtggaggcgtgatgttgcatttgcaggatttgaagttccgatacaaatg
gacatttcggcggagaagatgatatttggagtggctggtattgatcctcagagaagagat
gagttgatcaaggtgttggatatcgacatctcatggagactgcacaaggtatccgatggc
caaagaagacgtgtacagatctgtatgggactcctgaagccattcaaggttctccttttg
gatgaaataactgttgatcttgacgttctcgctagagcagaccttttgaagtttctgaga
aaggaatgtgaagaacgaggagcaaccataatctacgctactcatatattcgatggctta
gaggactggccaacacacattgtgtatgtagcaaacggaaaattgcagttagcattgcca
atggagaaagtgaaggagacaagcaagaagtcattgatgagaacagttgagagttggctg
aggaaagaaagagatgaagagagaaagagaaggaaagagaggaaagctaatgggcttcca
gagtttgaaacacggactgaagaaagccgtgtgactggtgatccagcacggatgctgaac
aatggctgggctgccgggagacttcactctacggttgcaggtggtgaggataatttcgtc
ttaagctcaaacagagttctaagataa
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integrated database retrieval system