KEGG   Arabidopsis thaliana (thale cress): AT5G02270
Entry
AT5G02270         CDS       T00041                                 
Symbol
ABCI20
Name
(RefSeq) non-intrinsic ABC protein 9
  KO
K12608  CCR4-NOT complex subunit CAF16
Organism
ath  Arabidopsis thaliana (thale cress)
Pathway
ath03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ath00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AT5G02270 (ABCI20)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ath03019]
    AT5G02270 (ABCI20)
Messenger RNA biogenesis [BR:ath03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     AT5G02270 (ABCI20)
SSDB
Motif
Pfam: ABC_tran AAA_21 AAA_15 AAA_29 Arf AAA_23 ORC-CDC6-like nSTAND3 AAA AAA_30 Zeta_toxin AAA_7
Other DBs
NCBI-GeneID: 831709
NCBI-ProteinID: NP_195847
TAIR: AT5G02270
UniProt: Q9LZ98 A0A5S9Y0N5
LinkDB
Position
5:complement(467038..469272)
AA seq 328 aa
MAVTEEEKKRNSTVEISGLRFTYPGIDGHPPPGSKPLIEDFSITLNSSDRCLLVGSNGAG
KTTILKILGGKHMVEPHMVRVLGRSAFHDTGLTSSGDLCYLGGEWRRDVAFAGFEVPIQM
DISAEKMIFGVAGIDPQRRDELIKVLDIDISWRLHKVSDGQRRRVQICMGLLKPFKVLLL
DEITVDLDVLARADLLKFLRKECEERGATIIYATHIFDGLEDWPTHIVYVANGKLQLALP
MEKVKETSKKSLMRTVESWLRKERDEERKRRKERKANGLPEFETRTEESRVTGDPARMLN
NGWAAGRLHSTVAGGEDNFVLSSNRVLR
NT seq 987 nt   +upstreamnt  +downstreamnt
atggcggtgacggaggaggagaagaagcggaattcaacggttgagatctccggattacgt
ttcacgtatcctggaatcgacggtcatccaccaccgggatcgaaaccacttattgaagat
ttctcaatcacgcttaattccagcgatcggtgtctcctcgtcggatctaatggcgctggg
aaaacgacgattctgaagatattgggagggaaacacatggtggagccgcatatggttagg
gttctgggtcgctcggcgtttcatgatactggattgacctcttctggtgatctctgttat
ctcggtggcgagtggaggcgtgatgttgcatttgcaggatttgaagttccgatacaaatg
gacatttcggcggagaagatgatatttggagtggctggtattgatcctcagagaagagat
gagttgatcaaggtgttggatatcgacatctcatggagactgcacaaggtatccgatggc
caaagaagacgtgtacagatctgtatgggactcctgaagccattcaaggttctccttttg
gatgaaataactgttgatcttgacgttctcgctagagcagaccttttgaagtttctgaga
aaggaatgtgaagaacgaggagcaaccataatctacgctactcatatattcgatggctta
gaggactggccaacacacattgtgtatgtagcaaacggaaaattgcagttagcattgcca
atggagaaagtgaaggagacaagcaagaagtcattgatgagaacagttgagagttggctg
aggaaagaaagagatgaagagagaaagagaaggaaagagaggaaagctaatgggcttcca
gagtttgaaacacggactgaagaaagccgtgtgactggtgatccagcacggatgctgaac
aatggctgggctgccgggagacttcactctacggttgcaggtggtgaggataatttcgtc
ttaagctcaaacagagttctaagataa

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