Arabidopsis thaliana (thale cress): AT5G24280
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Entry
AT5G24280 CDS
T00041
Symbol
GMI1
Name
(RefSeq) gamma-irradiation and mitomycin c induced 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
ath
Arabidopsis thaliana (thale cress)
Brite
KEGG Orthology (KO) [BR:
ath00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ath03036
]
AT5G24280 (GMI1)
03400 DNA repair and recombination proteins [BR:
ath03400
]
AT5G24280 (GMI1)
Chromosome and associated proteins [BR:
ath03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
AT5G24280 (GMI1)
DNA repair and recombination proteins [BR:
ath03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
AT5G24280 (GMI1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HATPase_c_3
SMCHD1_S5
HATPase_c
DYH2-5-8_CC
Motif
Other DBs
NCBI-GeneID:
832495
NCBI-ProteinID:
NP_197816
TAIR:
AT5G24280
UniProt:
F4KFS5
A0A654G3Z6
LinkDB
All DBs
Position
5:complement(8251220..8262603)
Genome browser
AA seq
1598 aa
AA seq
DB search
MSSRRSVKRSLVLDDDDDEDIFYNFKVLLPNGTSVKLTLKNPEPEISMQSFVNLVKKEYD
NARKDCLLMSKRMKVDWNSGGKFHLESNGGKMKGIVRFAAFKPDLCHIIRLDDGSGIAST
MYENLWDLTPDTDLLKELPENYSFETALADLIDNSLQAVWPYREGARKLISVDISGDHIT
VFDTGRGMDSSEGNSIDKWGKIGASLHRSQKTGAIGGNPPYLKPYFGMFGYGGPYASMFL
GRCDFSFCLPILICIVLLRLTLFSVRRTLVSSKTKESKKVFTLQFKKEALIDNRSIVGKN
WKTDGGMRDPSEEEMKLSPHGSFTKVEIFESEFDISKIYQLQCRLKDIYFPYIQFCLATI
FLCDELSKTGRTERPVAFQVNGEDLAEIAGGEVAITNLHSKGQFFSFQIRFTLFGGKRKG
TAQEANARLKFVYFPIVQGKESIEKILQSLEEEGCKVSESFQTFGRVSLRRLGRLLPEVR
WDSIPFMQRGNRASTLQKSCRRVKCFVDLDAGFSPTPSKTDLASQNPFSVALRNFGSKST
EKEKDDDVNIVIHREGKSVSYAHLEEKYQEWVLEMHNTHDEEAASGLDEAVLIVGSLDKK
ALGILRDAVRVHKEVRRKEKTWKRGQNIKILRGAYAGIHNNNVYATIDYFLIEGFEDEAG
GDTRILCRPIDRPENEGCKLSIIDGISKLEVQSSLSLPITIIDSGKCLPVDANEWNRKLD
KQQEKAPSKIDLLDERDCRELKIDGELPIGNSVRAGKAPPKQIVAVVRPACFTSLTPSKK
LDQKNIVKMDGEEMVMVVKLKSSDKNISSQRLFPTSRKGISGLYIFSLGSKFPNLFKKAG
TYNFSFSIGNSIKCNKTVVVRPSSKAARWELDDNLESLPCNVRVGSSLPPFRIACFDKYK
NKIPFTSVPSLEVELEASPGFLIKIDKLETNLINDGLILKIENMLVETDELDQIRPNYEA
TLEIRAMDNPFSVSVPCKVNPGPLKRVAVNNPKALENLLPDSTVEDFILELFDGYNNHVA
EGTDVLIHIDGYRIEDWMGINRKVDSRGCINLSGILKVTEGYGKSVSLSVMSGNEVIFCK
ESQIDERQLRLVTELPDCCTAGTNLMNLIFQVTELDGSLDTSIHHDEKSGCFHTMSIESD
SSSVESAIRYAFVHGSCKVSSLSLPENEGVFSCRVFHSRYPELQMSIKIQVTSAPTSERE
ESGYSTPHSKTTPPPESGIPSITNPWPTPCSQFGVLAIRSSSLALSSETSLMDMAQYTED
LKEKINIDEERRVELEERLKCLQAQREHAEQECSRLQASLEPLGAPFPECLSTKESMMKQ
IEEKHHDTAASVFCCLYRKAPPPRSLFLSQKGMFGVVALLGSVASTSLSRVLSEYLGKDT
MLSLVCKSSQFGPKSDEYRKFQSEAASLGRSITNRFLVICLDATRPWRNGLVRNDPQKRL
AMDNPYLPNGDPIPGFKGYAVNMIDLASEELDIQSSSGYGLRETLFYGVFRELQVYETAE
HLEAALPHINGGDAVSLDGVIARENGFIYSGCCTPEVHFPITVTERQEKALVQLEITRDK
KRKTEEMMTEENRSLRRLVKKLKKANEKYQNFTAMADS
NT seq
4797 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaggcgatcagtgaagagatcattggttcttgatgatgatgacgatgaggat
atattctacaacttcaaggtccttctacctaatggcactagtgtgaaactcacactgaaa
aacccagaaccggagatctcgatgcagtcttttgtcaacttggtgaagaaggagtatgat
aatgcacgaaaagattgtcttttgatgtctaagaggatgaaggttgattggaactcaggc
ggaaagtttcatctggagtcaaatggtgggaagatgaaaggcattgttcgctttgctgcg
tttaagcctgacttgtgccacataatacgtcttgatgacggttctggtatagcttccacc
atgtatgagaacttgtgggatttgacaccggatactgacctacttaaagagctaccagaa
aattatagctttgagacagctctcgcggatctaatagacaattccttgcaagctgtgtgg
ccttatcgtgaaggagctcgaaaactgattagtgtggatatatctggtgaccatattaca
gtctttgataccgggagaggaatggacagtagcgaaggaaactctattgataaatggggt
aaaataggggcctcactacatagatctcaaaaaaccggtgccattggaggcaatccacca
taccttaagccatattttgggatgtttggatacggaggtccttatgcttctatgttcttg
ggaaggtgcgacttcagcttctgtttacccatacttatctgcattgtcttgttacgtcta
actctcttctctgtcaggcgtactttggtgtcttctaagacaaaagagtccaagaaagtg
ttcactttgcaattcaagaaagaagcattgattgacaatcggtctatcgtgggaaaaaac
tggaagactgatggtggcatgagggacccgtcggaggaggaaatgaagttatcccctcat
ggaagctttacaaaggtcgagatatttgaatcagaatttgacatctcaaagatctatcaa
ctccagtgcaggctcaaggatatttactttccttacatccagttttgccttgcgaccatt
ttcttgtgtgatgaactctccaaaactgggaggactgaaaggcctgtggcgtttcaggtc
aatggggaagatttggctgagatagcaggtggagaggttgccattaccaacctacactcc
aagggtcaatttttttcatttcagattcgattcactcttttcggtgggaaaagaaaaggg
acagctcaagaggcaaatgctcgcctcaagtttgtttattttccaatcgtccagggaaaa
gaaagcattgagaaaattttgcagagtttagaagaggaaggatgcaaagtttctgaaagc
ttccagacttttggccgtgtttcattaagaaggcttggtcgcttacttccagaagtccgt
tgggattcaataccgtttatgcaaagaggaaacagagcttctactttgcagaaaagctgc
cgaagagtaaaatgctttgttgatttggatgctggttttagcccaacgccctccaaaact
gaccttgcaagccaaaatcctttctcagtggctttaagaaactttggtagtaagtcgacg
gagaaagagaaggatgatgatgtcaatattgtgattcatagagaaggaaaatctgtcagc
tatgcgcatctggaggaaaaatatcaagaatgggttttggagatgcataatacccatgat
gaagaagctgcatcgggtctagatgaagctgtcctcattgttggatccttggataaaaag
gcccttggcattttgcgtgatgctgtgagggtgcataaggaagttaggagaaaagaaaaa
acatggaaacgtggtcagaatataaagattctgagaggagcttatgctgggattcacaat
aacaatgtgtatgccaccattgactatttcctaatagaagggtttgaggacgaagcaggc
ggggatactcggattttatgcaggcctatcgatcgccctgagaacgagggatgcaagctt
tcaatcatcgatggaatttcgaaactggaagttcagagttctttatctttaccgatcact
ataatcgactctggaaagtgccttcctgtagatgcgaacgaatggaatagaaaacttgat
aagcaacaggaaaaagcaccgtcaaaaattgatttgctggatgaaagagattgcagagaa
ttgaagattgatggggaactacccattggcaattctgtgcgtgctgggaaagctcctccg
aaacagattgttgcagttgtccgacctgcatgcttcacgtctttaactccgtcaaagaag
ttggaccagaaaaatatcgttaagatggatggggaagaaatggtcatggtagtaaaattg
aaatcaagtgataagaatatatcttcgcagcgcttgtttcctacatcccgtaaagggatt
agtggtctttacatcttctcacttgggtccaagtttccaaaccttttcaagaaagctggc
acctacaatttttctttctccattggcaattcgattaagtgcaacaaaacggtggttgtt
agaccttcttctaaggcagcaaggtgggaacttgacgataatctggagtcccttccgtgc
aatgttcgggtgggttcttctcttccacctttccgtatcgcttgctttgataagtacaaa
aacaagattccgttcacttctgttccaagtctggaagttgaattggaagctagccctgga
ttcttaatcaaaattgacaaacttgagaccaacctgataaatgatggattaattcttaaa
atcgagaatatgctcgttgagactgatgagttagaccagatccgacctaattatgaagca
acgttagagatacgtgcaatggacaatcctttttctgtctcggttccttgtaaagttaat
cccgggcctctgaaacgagttgctgtgaataatcccaaggctctggaaaatttgcttcca
gattctactgtcgaagattttatcctggagttgttcgatggatataataaccatgttgcc
gaggggaccgatgttctgatacatattgatggttatcgtattgaagactggatgggcatc
aaccgtaaggttgatagtcgtggctgcattaatctatctggcattcttaaggtcacagaa
ggctatgggaaatctgtatcactctctgtaatgtctggtaatgaagttatcttctgtaaa
gagtcacaaattgatgaacgacagctaagacttgtaaccgagctgcccgactgctgtact
gctggtacaaatctcatgaacctcatcttccaagtgacggagttagatggttctttggat
actagcatccatcatgacgaaaaatcaggttgtttccatacaatgagcattgaatctgat
tcaagcagcgttgaaagtgcaatcagatatgcctttgtccacgggtcctgcaaagtttct
tctctctccctacctgagaacgagggtgtcttttcttgcagggtgttccattctcgatat
cccgagctgcagatgagcataaagattcaggtaacatctgctcccacatctgaaagagag
gagagtggatattctacaccccattcaaaaacgactccaccacctgaatcagggattcct
tcaatcacaaatccatggccgactccatgttcacagtttggagtattggccattaggtca
tcatcattggctctcagtagcgaaactagcctgatggatatggcacagtacactgaggat
ttaaaagaaaaaatcaatattgacgaagaacgccgagttgaattagaagagcgcctaaaa
tgtttgcaggctcaacgtgaacatgctgagcaagagtgtagtagactgcaagcttctctg
gaacctcttggtgcaccgtttccagaatgcctatccaccaaagaatcaatgatgaagcaa
atcgaagagaagcatcatgacactgcagcatcagtgttctgttgtctgtacagaaaggct
ccacctccacggtctctgtttctgtcacagaaaggaatgtttggcgttgtagcgcttcta
ggttcagttgcctccacgtcgctaagcagggttttgtctgaatatttggggaaagacaca
atgctttctttggtgtgcaaatcatcacagtttggacccaaaagcgatgagtatcgcaag
tttcaatctgaagcagctagcctcggacgatctatcaccaatcggtttcttgttatttgt
cttgatgcaactagaccttggaggaacggacttgtgaggaatgatcctcagaagagatta
gccatggataacccttacctgccgaatggagatcctatacccggtttcaaaggctacgct
gtgaacatgatagatttagcttcagaggagctggatatacaatcaagctcgggttacggg
cttagagagacactattctatggagttttcagagagttgcaggtatatgagaccgcagag
catcttgaagcagctcttcctcacatcaatggtggagacgctgtgtctctagatggtgtg
atcgccagagaaaacggtttcatatactctggttgctgtacaccggaagttcattttcca
ataaccgtaacggagaggcaagagaaggcattggtgcaactggaaataacaagagacaag
aagagaaagactgaggagatgatgactgaggagaatcgttcgttgcgcaggttggtgaaa
aagttgaagaaggcaaatgagaaataccaaaattttactgctatggcagactcttag
DBGET
integrated database retrieval system
