Aneurinibacillus thermoaerophilus: K3F53_02685
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Entry
K3F53_02685 CDS
T07487
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
athe
Aneurinibacillus thermoaerophilus
Pathway
athe03030
DNA replication
athe03410
Base excision repair
athe03420
Nucleotide excision repair
athe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
athe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K3F53_02685 (ligA)
03410 Base excision repair
K3F53_02685 (ligA)
03420 Nucleotide excision repair
K3F53_02685 (ligA)
03430 Mismatch repair
K3F53_02685 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
athe03032
]
K3F53_02685 (ligA)
03400 DNA repair and recombination proteins [BR:
athe03400
]
K3F53_02685 (ligA)
Enzymes [BR:
athe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K3F53_02685 (ligA)
DNA replication proteins [BR:
athe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K3F53_02685 (ligA)
DNA repair and recombination proteins [BR:
athe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K3F53_02685 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K3F53_02685 (ligA)
MMR (mismatch excision repair)
DNA ligase
K3F53_02685 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K3F53_02685 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
HHH_3
RNA_pol_A_CTD
BRCT_2
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
QYY43219
LinkDB
All DBs
Position
474487..476493
Genome browser
AA seq
668 aa
AA seq
DB search
MDRNEAIQRVKELRKIIEQHNYYYYVKDNPQISDYEYDQLMQELIHIETEFPELLTPDSP
TQRVGGAPLESFEKVEHSIPMLSLSNAFDEQDLRDFDRRVRQGLGVEGPIGYICELKIDG
LAVSLRYENGRFVRGATRGDGRTGEDITQNLRTIRSLPLVLKKPLTIEVRGEAFMPRRAF
ERLNKERAMREELLFANPRNAAAGSLRQLDPKIAASRSLDIFLYSVVGEDTLPVDTHSGS
LSMLEELGFKVNPERRVCEGIEEVISFIEGWTEKRGELPYDIDGMVVKVDRLAYQEELGY
TAKSPRWAIAYKFPAEEAITILRDIEVTVGRTGAITPTAILDPVQLAGTTVQRASLHNED
IIREKGIMIGDHVVVKKAGDIIPEIVEVKVDKRTGDEQPYHMPTHCPACDSELVRLDEEV
ALRCINPQCPAQIREGIIHFVSRNAMNIDGVGEKVVTQLYEKGLVRSVADLYYLDREELL
KLERMGEKSVDNMLNAIEASKNNSLERLLFGLGIRFVGEKAARLLAQHFGTMEALQNATE
EEIVTVHEIGTKMAESIVKYFAKPEVVETIERLREAGVNMEYKGLRPEEVDADSPFAGKT
VVLTGTLASVTRKEAQHMIEARGGKVSGSVSKRTDLVVAGEAAGSKLGKANELGIQVIDE
KTFLEWIK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatcgaaatgaagcgattcaacgagtaaaagagctgcgcaaaatcatcgaacagcat
aattattattattatgtgaaagataacccgcaaatctctgactatgagtacgatcagttg
atgcaggagttaattcatattgaaacagaatttcccgagcttttaacacctgactctcca
acacagcgggtgggcggtgctccgctcgaatccttcgaaaaagtggaacatagcattcct
atgcttagtctcagcaatgcgtttgatgaacaggacttgcgcgattttgatcgccgtgtc
cgccaagggctgggcgtagaggggccgattggctatatatgtgagttgaaaatcgacggg
ttggccgtgtcgctccgctatgaaaacggacgtttcgtgcgcggcgcaacgcgcggcgac
gggcggacaggcgaagacattacacagaatctgcgcaccattcgctcgctgccgcttgtg
ttaaaaaagccgcttactatcgaagttcgcggtgaggcgttcatgccgcgtcgcgcattt
gaacgtttgaacaaagaacgcgccatgcgtgaagagctattgttcgccaacccgcgcaac
gcggcagccggttctttgcgccagttggatccgaagattgctgcatcccgttcgctcgat
attttcctctactcggtggtaggagaagacacgttgccggtagatactcacagcggctcg
ctttccatgctggaggaacttggatttaaagtgaatcctgagcgccgtgtttgtgaaggg
attgaggaggtcatttcttttatcgaaggctggactgagaagcgaggcgaacttccatat
gacattgatggaatggttgttaaagtggatcgcctcgcctatcaagaggagctgggctat
acggcgaaaagtccgcgctgggcgatcgcgtacaagtttccggcagaagaagcgattacg
attctgcgtgacatcgaagtcactgtcgggcgtacgggtgcgataacgccgacggccatt
cttgatccggtgcagcttgctggaacaacagtacagcgagcttcccttcataatgaagat
attattcgcgagaaaggcattatgattggcgatcatgttgtcgtaaaaaaagcgggcgat
attattcctgaaattgtggaggttaaagtcgataagcggactggagatgagcagccgtac
catatgccgacgcattgcccggcatgtgatagcgaactggtgcgccttgatgaagaagtg
gcacttcgctgtattaacccgcagtgtccggcgcaaatccgcgaggggattatccatttt
gtatctcgtaatgcgatgaatattgacggtgtcggtgagaaagtcgtgacccagctttat
gaaaaaggattggtgcgaagcgtggccgatctttattatctggatcgtgaagagttgctg
aagctagagcggatgggtgaaaaatcggtcgataatatgttaaatgctatcgaagcgagc
aaaaataattctttggagcgtttgttatttggcttaggtattcgtttcgtcggtgaaaaa
gccgcccgcttgctggcacagcactttggcacaatggaagcgttgcagaatgcgaccgaa
gaagagattgtcaccgttcatgaaatcgggacaaaaatggcggaaagcattgtaaagtat
tttgccaagccggaagtggtagagacaattgaacgcctgcgtgaggcgggagtgaatatg
gaatataagggcctgcgtccggaagaagtggacgctgattcgccgtttgcgggcaaaacg
gtcgtgctgacgggcacgcttgccagcgtgacacgtaaagaggcacagcatatgatcgag
gcgcgcggtggaaaagtatccggcagtgtcagcaagaggacggaccttgttgtcgccggg
gaggcggccggttccaaactggggaaagcgaatgagctagggattcaagtgattgatgaa
aagacattccttgagtggataaaatag
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integrated database retrieval system
