Amycolatopsis thermalba: L1857_10040
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Entry
L1857_10040 CDS
T08681
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
athm
Amycolatopsis thermalba
Pathway
athm03030
DNA replication
athm03410
Base excision repair
athm03420
Nucleotide excision repair
athm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
athm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L1857_10040 (ligA)
03410 Base excision repair
L1857_10040 (ligA)
03420 Nucleotide excision repair
L1857_10040 (ligA)
03430 Mismatch repair
L1857_10040 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
athm03032
]
L1857_10040 (ligA)
03400 DNA repair and recombination proteins [BR:
athm03400
]
L1857_10040 (ligA)
Enzymes [BR:
athm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L1857_10040 (ligA)
DNA replication proteins [BR:
athm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L1857_10040 (ligA)
DNA repair and recombination proteins [BR:
athm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L1857_10040 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L1857_10040 (ligA)
MMR (mismatch excision repair)
DNA ligase
L1857_10040 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L1857_10040 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Zn_ribbon_Nudix
Motif
Other DBs
NCBI-ProteinID:
UQS23131
LinkDB
All DBs
Position
2030303..2032423
Genome browser
AA seq
706 aa
AA seq
DB search
MSETPAAQDVTEVPAEVRERHGALAEEVRGHQFRYYVLDSPVITDGEFDELLKELERLES
EYPGLATPDSPTQNVGGTFSTDFVAVDHLERMMSLDNVFDEEELQAWVDRVEREVGGATQ
YLCELKIDGLAINLLYEKGRLVRGLTRGDGRTGEDVTLNVRTLEQVPETLTGTDEYPVPD
LVEVRGEVFFRVEDFAELNARLVEAGKPPFANPRNTAAGSLRQKDPKVTRSRKLRLICHG
LGKREGFEPARQSEAYEALAAWGLPVSGHTKVVDKASELLDHIRYWGEHRHDAEHEIDGI
VVKVDQVSLQRRLGSTSRAPRWAIAYKYPPEEATTRLLDIQVNVGRTGRVTPFAVMEPVK
VAGSTVAMATLHNAQEVKRKGVLIGDRVVIRKAGDVIPEVLGPVVDVRTGDEREFVMPTF
CPECGTKLAHQKEGDVDIRCPNARSCPAQLRERLFHLAGRGAFDIEVLGYEAATALLESG
VVVDEGDIFDLDEEKLGRVELFRTKAGELSANGRKLLANLDSAKDRPLWRVLVALSIRHV
GPTAAQALAREFGSLEAIENADEAAMADVDGVGPTIANALREWFAVDWHREVVEKWRRAG
VRMVEERDESVPRTLEGLSIVVTGSLNTFSRDEAKEAIMSRGGKAAGSVSKKTAFVVVGD
APGSKYDKAVQLKVPILDEAGFQVLLDRGPEAAAEVALPTEEPGGE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgagactcccgccgcacaggacgtcaccgaggttcccgccgaggtccgcgagcgc
cacggcgcgctcgcggaagaggtgcgcgggcaccagttccggtactacgtgctggactcg
ccggtcatcaccgacggcgagttcgacgagctgctcaaggaactggagcggctggagtcg
gagtacccgggcctggccacgcccgactcgccgacccagaacgtgggcggcacgttctcc
accgacttcgtcgcggtcgaccacctcgaacgcatgatgagcctggacaacgtcttcgac
gaggaggagttgcaggcgtgggtggaccgggtggaacgcgaggtcggcggggccacgcag
tacctgtgcgagctgaagatcgacgggctggccatcaacctgctgtacgagaaggggcgg
ctggtccgggggctcacccgcggcgacggccgcacgggtgaggacgtcacgctcaacgtc
cgcacgctggagcaggtgccggagacgctgaccggcaccgacgagtacccggtgcccgac
ctcgtcgaggtgcgcggcgaggtgttcttccgcgtcgaggacttcgccgagctgaacgcc
cggctggtcgaggcgggcaagccgccgttcgcgaacccgcgcaacaccgcggccgggtcg
ttgcggcagaaggacccgaaggtcacgcgcagccgcaagctgcggctgatctgccacggg
ctgggcaagcgcgagggtttcgagccggcgcggcagtcggaggcctacgaggcgctggcg
gcgtgggggctgccggtgtccggccacaccaaggtggtcgacaaggcgtccgagctgctg
gaccacatccggtactggggcgagcaccggcacgacgccgagcacgagatcgacggcatc
gtggtgaaggtcgaccaggtgtcgctgcagcggcggctgggcagcacctcccgcgcgccg
cggtgggccatcgcctacaagtacccgccggaggaggccaccacccggctgctcgacatc
caggtcaacgtcggccgcaccggccgggtcacgccgttcgcggtgatggagccggtgaag
gtggccgggtcgacggtggcgatggcgacgctgcacaacgcgcaggaggtcaagcgcaag
ggcgtgctgatcggcgaccgcgtggtgatccgcaaggcgggcgacgtgatccccgaggtg
ctcggtcccgtggtcgacgtgcgcaccggggacgagcgcgagttcgtcatgcccacgttc
tgcccggagtgcggcacgaagctggcgcaccagaaggagggcgacgtcgacatccgctgc
ccgaacgcgcggtcgtgtcccgcgcagttgcgggagcggctgttccacctggccgggcgg
ggcgcgttcgacatcgaggtgctcggttacgaggcggcgacggcgctgctggagtccggt
gtggtcgtcgacgagggcgacatcttcgatctggacgaggagaagctggggcgggtcgag
ctgttccgcacgaaggcgggggagctgtcggccaacgggcgcaagctgctggccaacctg
gacagcgcgaaggaccgtccactgtggcgggtgctggtggcgttgtcgatccggcacgtc
ggcccgacggcggcgcaggcgctggcgcgcgagttcggctcgctggaggcgatcgagaac
gccgacgaggccgcgatggccgatgtggacggtgtgggcccgacgatcgcgaacgcgctg
cgcgagtggttcgccgtcgactggcaccgcgaggtggtggagaagtggcgccgcgccggg
gtccggatggtggaggagcgcgacgagtcggtgccgcgcacgctggagggcctgtcgatc
gtggtgaccggttcgctgaacacgttctcccgcgacgaggccaaggaggcgatcatgtcg
cgcggcggcaaggccgcgggatcggtgtcgaagaagacggcgttcgtcgtggtcggcgac
gcgccgggctccaagtacgacaaggcggtccagctgaaggtccccatcctcgacgaggcc
ggtttccaggtgctgctggaccggggcccggaagccgccgccgaggtggcgctaccgacg
gaggagccgggcggtgagtga
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