Aliarcobacter thereius: ATH_1098
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Entry
ATH_1098 CDS
T07638
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
athr
Aliarcobacter thereius
Pathway
athr03030
DNA replication
athr03410
Base excision repair
athr03420
Nucleotide excision repair
athr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
athr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ATH_1098 (ligA)
03410 Base excision repair
ATH_1098 (ligA)
03420 Nucleotide excision repair
ATH_1098 (ligA)
03430 Mismatch repair
ATH_1098 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
athr03032
]
ATH_1098 (ligA)
03400 DNA repair and recombination proteins [BR:
athr03400
]
ATH_1098 (ligA)
Enzymes [BR:
athr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ATH_1098 (ligA)
DNA replication proteins [BR:
athr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ATH_1098 (ligA)
DNA repair and recombination proteins [BR:
athr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ATH_1098 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ATH_1098 (ligA)
MMR (mismatch excision repair)
DNA ligase
ATH_1098 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ATH_1098 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
PTCB-BRCT
HHH
HHH_5
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
QBF16162
LinkDB
All DBs
Position
complement(1064741..1066690)
Genome browser
AA seq
649 aa
AA seq
DB search
MTKNEYDININKLILWAKAYYVDDEPIASDDEYDKLSRKCLKFEETNPSLVHPNSPNNRI
GGHVLDNFKKASHLSRMWSQEDIFNNRELEDWITRASKVEREFSFFIQPKFDGASLNLIY
ENGLLQQAITRGDGSVGEDVTHNVLTIHSIPLEISEKSLIEIRGEIVIKKDDFIKINEDR
LKNEEQTFANPRNAAAGSLRQLDSKITAKRKLFFNVWGVGKNNLEFKKTSDMMEYIFSLG
FERSPMQIRVKNINEIIETYKEMLAKRDDFSMLLDGMIIKIDDINIQNILGYTQKFPRWS
CAYKFPAIEKTTKLKDIILQVGRTGVVTPVAKVEAVEIDGAIVERATLHNFDEIKRLDLK
INDEIIIIRSGDVIPKITKVLIERRDGTQIDIIKPVNCPNCQRELLVEDIMIKCQNLDCS
SRVVNSIIYFASKNCMNIDGLGEKIVELLVREKKIYDILDIYSLRYEDLENLEGFKEKKI
NNLLRAIDNSKNSELYRVITALGIEHIGEVASKAICNKFALNLVEAKYEELISIDGIGEQ
MANSFLEFMRVNKDIVLKLFEILEPKFIIKEEAKNNPFKSKTVVITGTMSKSRDEMKSFF
EDLGAKVSSSVSKKTDFLIYGEDSGSKYDKAIELGIRTLDEEEVNRLLD
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagaacgaatatgatataaatataaataaattaattttatgggctaaggcttat
tatgtagatgatgagccaatagctagtgatgatgagtatgataaactttcaagaaaatgt
ttaaaatttgaagaaactaaccctagcttagtacatccaaattctccaaataacagaatt
ggtggacatgtattagataactttaaaaaagcttcacatttaagtcgtatgtggagtcaa
gaagatatatttaataatagagaacttgaagattggataacaagagcttcaaaggttgaa
agagagtttagtttttttattcaaccaaagtttgatggagctagtttaaatcttatttat
gaaaatggattattacaacaagctattacaagaggtgatggtagtgtaggagaagatgtt
acacataatgttttaacaatacactctatacctttagagatttctgaaaaatcgcttatt
gaaataagaggcgaaattgtaataaaaaaagatgattttattaagataaatgaagataga
ctaaaaaatgaagaacaaacatttgctaatccaagaaatgcagctgcaggtagtttaaga
caacttgattcgaaaattacagcaaaaagaaaactcttttttaatgtttggggagttgga
aaaaataatttggaatttaaaaaaactagtgatatgatggaatatatattttcattaggt
tttgaaagatcacctatgcaaataagagttaaaaatatcaatgaaataattgaaacatat
aaagagatgttagcaaaaagagatgacttctctatgcttcttgatggaatgattataaaa
atagatgatataaatattcaaaatattttaggatatacacaaaaatttccaagatggtca
tgtgcatataaatttccagctattgaaaaaactacaaaattaaaagatattatacttcaa
gtaggtagaacaggagtcgttactcctgttgctaaagtagaagctgttgaaattgatgga
gctattgttgaaagagctacattacataattttgatgaaataaaaagattagatttaaaa
ataaatgatgagataattattataagaagtggagatgtaattccaaaaattacaaaagtt
ttaattgagagaagagatggaacacaaattgatattataaaaccagttaattgtccaaat
tgtcaaagagaacttttagttgaagatattatgattaaatgtcaaaaccttgattgttct
tcaagagttgtaaattctattatatattttgcaagtaaaaattgtatgaatattgatggt
ttaggtgagaaaatagttgaacttttagttcgtgaaaaaaagatttatgatattttggat
atatattctttaaggtatgaagatttagaaaatcttgaaggatttaaagaaaaaaagata
aataatttattaagggcaattgataattcaaaaaatagtgaattatatagagtaataaca
gctttagggatagagcatattggagaagttgcatcaaaagcaatttgtaataagtttgct
ttaaatttagtagaagctaaatatgaagagttaataagcattgatggaataggtgagcaa
atggcaaactcttttttagagtttatgagagtaaataaggatatagttttaaagttattt
gaaattttagaacccaaatttattataaaagaagaagctaagaataatccttttaaatca
aagacagttgtaataactggaactatgagtaaaagtagggatgaaatgaaaagttttttt
gaggacttaggagctaaagtatcttcaagtgtgtctaaaaaaactgatttcttgatttat
ggagaagattctggaagtaaatatgataaagcaatagagttaggaataagaactttagat
gaagaagaagtaaatagattattagattaa
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