Actinocatenispora thailandica: Athai_21720
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Entry
Athai_21720 CDS
T07045
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
atl
Actinocatenispora thailandica
Pathway
atl03030
DNA replication
atl03410
Base excision repair
atl03420
Nucleotide excision repair
atl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Athai_21720 (ligA)
03410 Base excision repair
Athai_21720 (ligA)
03420 Nucleotide excision repair
Athai_21720 (ligA)
03430 Mismatch repair
Athai_21720 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atl03032
]
Athai_21720 (ligA)
03400 DNA repair and recombination proteins [BR:
atl03400
]
Athai_21720 (ligA)
Enzymes [BR:
atl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Athai_21720 (ligA)
DNA replication proteins [BR:
atl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Athai_21720 (ligA)
DNA repair and recombination proteins [BR:
atl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Athai_21720 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Athai_21720 (ligA)
MMR (mismatch excision repair)
DNA ligase
Athai_21720 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Athai_21720 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
BCJ34669
UniProt:
A0A7R7HX36
LinkDB
All DBs
Position
2418316..2420499
Genome browser
AA seq
727 aa
AA seq
DB search
MATSDPGSELTATPTAEQEAVAGAEPTAQARQRHRALAEQIDDHQYRYYVLDAPTASDAE
YDGLMRELEALEAQYPALRTPNSPTQRVGGTYSTQFTPVEHIERMLSLDNAVDDEEMAAW
NERVEREAAGAKVSYLCELKIDGLAVDLVYRDGRLARGATRGDGRTGEDITPNVRSVEGI
PHELSGSAEFPVPPLVEIRGEIYFPVEGFTELNASLVEQGKPPFANPRNAAAGSLRQKDP
RITAQRPLRLIVHGLGAREGFEPTRQSESYAALQAWGLPTSPRWRVVPALADVLDYISYY
GEHRHEVEHEIDGVVVKVDEVSVQRRLGATSKAPRWAIAFKYPPEEVNTKLTDVRVNVGR
TGRVTPYAVLEPVRVAGSTVAFATLHNASEVRRKGVLIGDTVVLRKAGDVIPEVVGPVTD
LRPADAHEFVMPTRCPECGTELRPEKEGDADIRCPNTRRCPAQLRERVFHLAGRGSFDIE
ALGYKAASALLADQVIADEGDLFGLDAARLASSPFFVNKDGTLGSNAHRLLEHLAAAKDA
ALWRVLVGLSIRHVGPTAARALAREFGSVERIAEAGQEELAAVDGVGPTIAEAVRDWFAV
DWHREVVDKWRAAGVRMQEEHADDAPRPLAGVTVVVTGSLAGYSRDEATEQIQSRGGKVT
GSVSKKTGFVVVGENPGSKYDKALALKVPVLTEDGFAVLLSEGPEAAAARAQVGPDEDAA
AAGGNRR
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
gtggcgacgagcgatccgggcagcgagttgacggcgacaccgaccgccgagcaggaggcg
gtggccggggccgagccgacggcccaggcgcggcagcggcaccgggcgctcgccgagcag
atcgacgaccatcagtaccgctactacgtgctggacgcgccgaccgcctcggacgccgag
tacgacgggctgatgcgcgagctggaggcgctggaggcgcagtacccggcgctgcgcaca
ccgaactcgccgacccagcgggtcggcggcacctactcgacccagttcaccccggtcgag
cacatcgagcggatgctcagcctcgacaacgcggtcgacgacgaggagatggccgcctgg
aacgagcgggtcgagcgcgaggccgccggggcgaaggtctcctacctgtgcgagctgaag
atcgacgggctcgccgtcgacctggtctaccgggacggccggctggcgcgcggcgcgacc
cgcggcgacggccggaccggtgaggacatcaccccgaatgtgcgcagcgtcgaggggatc
ccgcacgagctgtccggctcggccgagttcccggtgcccccgctggtcgagatccgcggc
gagatctacttcccggtcgagggtttcaccgagctgaacgcctcgctggtcgagcagggc
aagccgccgttcgccaacccgcgcaacgccgccgccggcagcctgcgccagaaggacccg
cggatcaccgcgcagcggccgctgcggctgatcgtgcacggcctcggcgcccgggagggg
ttcgagccgacccgccagtccgagtcgtacgcggcgctgcaggcctggggcctgccgacc
tcgccccggtggcgggtcgtcccggcactggccgacgtgctcgactacatcagctactac
ggcgagcaccggcacgaggtcgagcacgagatcgacggcgtcgtggtcaaggtcgacgag
gtcagcgtgcagcgccggctcggcgccaccagcaaggcgccacgctgggccatcgccttc
aagtacccgccggaggaggtcaacacgaagctgaccgacgtgcgggtcaacgtgggccgc
actggccgcgtcacgccgtacgcggtgctcgaaccggtccgggtcgccggctcgacggtc
gcgttcgcgaccctgcacaacgcctcggaggtgcggcgcaagggcgtgctgatcggcgac
acggtggtgctgcgcaaggccggcgacgtcatcccggaggtggtcgggccggtcaccgac
ctgcggccggccgacgcgcacgagttcgtgatgcccacccgctgccccgagtgcggcacc
gagctgcgcccggagaaggagggtgacgccgacatccgctgcccgaacacccggcgctgc
ccggcgcagctacgtgagcgcgtcttccacctggccggccgcggctcgttcgacatcgag
gcgctgggttacaaggcggccagcgcgctgctcgccgaccaggtcatcgccgacgagggg
gacctgttcgggctggacgccgccaggctcgccagctcgccgttcttcgtcaacaaggac
ggcacgctcggcagcaacgcgcaccggttgctcgaacacctggccgcggccaaggacgcg
gcgctgtggcgggtgctcgtcgggctgtcgatccggcacgtggggccgaccgcggcgcgg
gcgctggcgcgcgagttcggctcggtcgagcggatcgcggaggccggtcaggaggagttg
gccgcggtcgacggggtggggccgacgatcgccgaggcggtccgtgactggttcgccgtc
gactggcaccgcgaggtggtcgacaagtggcgcgccgccggggtgcggatgcaggaggaa
cacgcggacgacgcgccgcggccgctggccggggtgaccgtcgtggtgaccggttcgctg
gccggctactcccgggacgaggcgaccgagcagatccagtcccgcggtggcaaggtgacc
ggttcggtgtccaagaagaccggcttcgtggtggtcggcgagaacccgggcagcaagtac
gacaaggcgctggcgctgaaggttccggtgctgaccgaggacggcttcgccgtgctgctg
tccgaaggcccggaggcggccgccgcgcgcgcccaggtcggtccggacgaggacgccgca
gcggccggcgggaaccgacggtga
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