Acinetobacter tandoii: FM020_12530
Help
Entry
FM020_12530 CDS
T06790
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
atn
Acinetobacter tandoii
Pathway
atn03030
DNA replication
atn03410
Base excision repair
atn03420
Nucleotide excision repair
atn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FM020_12530 (ligA)
03410 Base excision repair
FM020_12530 (ligA)
03420 Nucleotide excision repair
FM020_12530 (ligA)
03430 Mismatch repair
FM020_12530 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atn03032
]
FM020_12530 (ligA)
03400 DNA repair and recombination proteins [BR:
atn03400
]
FM020_12530 (ligA)
Enzymes [BR:
atn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FM020_12530 (ligA)
DNA replication proteins [BR:
atn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FM020_12530 (ligA)
DNA repair and recombination proteins [BR:
atn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FM020_12530 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FM020_12530 (ligA)
MMR (mismatch excision repair)
DNA ligase
FM020_12530 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FM020_12530 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
RNA_lig_T4_1
GFRP
Motif
Other DBs
NCBI-ProteinID:
QDK98671
LinkDB
All DBs
Position
complement(2665595..2667634)
Genome browser
AA seq
679 aa
AA seq
DB search
MTQQNTVVAQMRQLIQILAQHNHAYYVMDQPTIADSEYDQLFHQLKALEQQYPEWTQPDT
PTNKVGGKPLAKFESVTHAVPMLSLGNVFNQEELFAFARRIEERLPNQKIEYDVELKFDG
LAISLWYEHGVLVRGVTRGDGETGEDITQNVKTIRNLPKVLSHASGVVPELLEVRGEVLM
PKLGFEKLNAENEAKGEKTFANPRNAAAGSLRQLDPAIAASRPLAFYAYGIAQCQPSHGL
ATMSASLEWLTEFGFAVGERHFICDSIQAVQQAYEKINQERPDLSVEIDGMVVKVNDLKQ
QQQLGFLSREPRWATAYKFPAVAALTTVENIDWQVGRTGTLTPVARLNPVAVGGVTVSNV
TLHNIGEIHRLDVRIGDTVSVYRSGDVIPKVEKVWPEFRPDDTQDVHLPEQCPVCASPVV
MPEGEALARCSGGLYCAAQRIEAIRHFVSRKAMDIEGLGERWVESLLYLDLLQDVADIYH
LHEHREKLLTIEKMGEKSVQNLFDAIENSKKTTLAAFIYALGIRGVGETTARMLANTFQT
FEALQKADIDALMKTPDVGNITAEWIYDFFQAPHNLEVLERLFAAGIHWDAPVAPSRQPL
NGESWVVTGTLSSMGRDEATQLLQALGARVSGSVSSKTKCVVAGEKAGSKLDKAEKLGIA
VINEAEFIQLMQEYGQLEA
NT seq
2040 nt
NT seq
+upstream
nt +downstream
nt
atgactcagcaaaacactgttgtcgcacaaatgcgtcaactgattcagattctggcacag
cataatcatgcctattatgtcatggatcagcccaccattgccgacagtgaatatgaccag
ttatttcaccaattgaaggcactcgaacaacaatatccggaatggactcaaccggatacc
ccgaccaataaagtgggtggcaagcctttagcaaaatttgaatcggtcacacatgccgtg
ccaatgctgtctttaggcaatgtgtttaatcaggaagagttgtttgcttttgctcgacgc
attgaagagcgcttaccgaatcaaaagattgaatatgatgtcgaattgaagttcgatggt
ttggcaatttctttgtggtatgaacatggggtgctggtgcgcggtgtaacccgtggcgat
ggtgaaacgggtgaagacattacccaaaatgtgaaaaccattcggaatttgcctaaagta
cttagccatgcttcaggtgtagtgcctgagctgttagaagtacgtggtgaagtactgatg
cctaaattgggcttcgagaaactgaatgccgaaaatgaagccaaaggcgaaaaaaccttt
gctaacccacgaaatgccgctgcgggtagtttaagacagcttgatccagcaattgcagcg
tcacgtcctttggcgttttatgcgtatggcattgcgcagtgtcaaccgagtcatggcttg
gcgaccatgtctgcaagtctggaatggttaacagaatttggctttgccgtaggtgagcgt
catttcatttgtgacagcattcaagccgtgcagcaagcctatgaaaaaattaatcaggaa
cgtccagatttaagcgttgaaattgacgggatggtggtcaaggtcaatgatttaaaacag
caacagcaattgggctttttaagtcgtgaaccacgctgggcaaccgcctacaaattccca
gctgttgcagctttaaccacggtagaaaatattgactggcaggtcgggcgtacaggaacc
ttaacccctgtggcgcggttaaatcctgtggccgtgggtggggtcacggtttctaatgtg
actttgcataatattggtgaaattcaccgtttagatgtacgcattggtgatacggttagc
gtctatcgcagtggtgatgtaattccaaaagttgaaaaagtctggcctgaattccgtcca
gatgatactcaggacgtgcatttgcctgaacagtgtccagtgtgtgcttcgcctgtggtg
atgcctgaaggtgaagctttagcacgttgttcaggtggtttgtattgtgcggcacagcgt
atcgaagcgattcgtcattttgtttcgcgtaaagccatggatattgaaggtttgggcgag
cgttgggttgaatctctattgtatctggatttactacaagatgtggcggatatttatcat
ctgcatgagcaccgtgaaaaattactcaccattgaaaaaatgggcgagaaatcggttcag
aatctgtttgatgcgattgaaaacagtaaaaaaactacgctggctgctttcatttatgca
ttggggattcgcggggtcggggaaactacggcacgtatgttagccaataccttccagacc
tttgaagcactgcagaaggcagatatcgatgcactgatgaaaacgccagatgtgggcaat
atcactgcggaatggatctatgactttttccaagcaccgcataatttggaagtgttagag
cgtctattcgctgcgggtattcactgggacgcgcctgtagcaccaagtcgccaaccttta
aatggtgaaagttgggtggtgacagggacactgagtagcatggggcgtgatgaagcaaca
cagctcctgcaagcactgggcgcacgtgttagtggtagtgtctcgagtaaaaccaagtgt
gtcgttgcgggtgaaaaagcaggttccaagttggataaagcggaaaagctcggtattgct
gtgatcaacgaagctgaatttattcaattgatgcaagagtatggtcagttagaggcttag
DBGET
integrated database retrieval system
