Actinomarinicola tropica: GH723_05620
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Entry
GH723_05620 CDS
T06914
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
atq
Actinomarinicola tropica
Pathway
atq03030
DNA replication
atq03410
Base excision repair
atq03420
Nucleotide excision repair
atq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
atq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GH723_05620 (ligA)
03410 Base excision repair
GH723_05620 (ligA)
03420 Nucleotide excision repair
GH723_05620 (ligA)
03430 Mismatch repair
GH723_05620 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
atq03032
]
GH723_05620 (ligA)
03400 DNA repair and recombination proteins [BR:
atq03400
]
GH723_05620 (ligA)
Enzymes [BR:
atq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GH723_05620 (ligA)
DNA replication proteins [BR:
atq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GH723_05620 (ligA)
DNA repair and recombination proteins [BR:
atq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GH723_05620 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GH723_05620 (ligA)
MMR (mismatch excision repair)
DNA ligase
GH723_05620 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GH723_05620 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
Auto_anti-p27
Nlig-Ia
PTCB-BRCT
RNA_ligase
zf-FPG_IleRS
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QGG94628
UniProt:
A0A5Q2RCQ0
LinkDB
All DBs
Position
1115157..1117271
Genome browser
AA seq
704 aa
AA seq
DB search
MSPDQNPEVPPDAGSVVPDDVPAEVVAEVEALREQIRHHNRLYHELDAPEIPDADYDALV
RALNELEALHPSLVTPDSPTQTVGGPRSATFAPVVHRVPMMSLDNAMDVEELRAWGQRLE
RRLVDEEGADHPPVAFVCELKIDGVAVSITYEDGRLVQAATRGDGRVGEDITENVRTLAD
VPERLGGSPPARLEVRGEVYMPVATFDELNDRQDAAGLRRYANPRNTAAGSLRQKDPSIT
ASRGLRLWCYQLGEAEGGPSFDRHAETLEYLAELGLPVNPEIRTLTGQEEVEAFCRRWEE
HRHDLDYEIDGVVVKVDDLARRAALGFTSKAPRWAIAFKFPPEERTTLLRDIEVSIGRTG
KATPFAVLEPVFVGGSTVGLATLHNQIQVAAKDVRPGDTVVVRKAGDVIPEVVGPVLSER
PEGLAEWTFPDTCPRCGGPLVRLEGEGHHFCTNIDCPAQRTGSIEHFASRGAMDIEGLGE
QRVHLFVEMGLLSDVGDIYSLDFDRLLGREGFGETSVRNLRDAIEASKERPLANLLVGLN
IRHLGPTGARALAQAFGHLDALMAASEEDIAAVDGIGPTIAQSVHAHFASDRNRAVVEKL
RAAGLNLEGPATPDVPQTLAGMSVVVTGTLDGYSREEAEEAITSRGGKSPGSVSSRTTAV
VVGEGPGASKLSKAVDLGVPILDGEGFERLLSTGEVRPVEAPPT
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
gtgagccccgaccagaaccccgaggtcccgcccgacgccgggtccgtggtgcccgacgac
gtccccgcggaggtcgtggccgaggtcgaggccctgcgggagcagatccgccaccacaac
cggctctaccacgagctcgacgcgccggagatccccgacgccgactacgacgccctcgtc
cgggcgctcaacgagctcgaggcgctccacccgagcctcgtcacgccggactcgcccacc
cagaccgtcggcggcccccggtcggccaccttcgccccggtcgtccaccgggtgccgatg
atgtcgctcgacaacgccatggacgtcgaggagctgcgcgcctggggccagcggctggag
cgccgcctcgtcgacgaggagggcgccgaccacccgccggtggcgttcgtgtgcgagctg
aagatcgacggggtggcggtgtcgatcacctacgaggacggccgcctcgtgcaggccgcc
acccggggcgacggccgggtgggggaggacatcaccgagaacgtccgcaccctcgccgac
gtgcccgagcgcctcggcgggtcgccgccggcccggctcgaggtccgcggcgaggtctac
atgcccgtcgccaccttcgacgagctgaacgaccgccaggacgcggccggcctgcgtcgc
tacgccaacccccgcaacaccgcggccggctcgctgcgccagaaggacccgtcgatcacc
gcctcgcgcggcctccggctgtggtgctaccagctgggcgaggcggagggcggcccgagc
ttcgaccgccacgccgagacgctcgagtacctggccgagctcggcctgcccgtcaacccc
gagatccgcaccctcaccgggcaggaggaggtcgaggcgttctgccgccggtgggaggag
caccgccacgacctcgactacgagatcgacggcgtcgtcgtgaaggtcgacgacctcgcc
cggcgcgccgccctggggttcacgtccaaggcgccgcgttgggccatcgcgttcaagttc
ccacccgaggagcgcaccaccctcctgcgcgacatcgaggtctcgatcggtcgcaccggc
aaggccacgcccttcgccgtgctcgagccggtgttcgtcggcgggtccacggtcgggctg
gccacgctgcacaaccagatccaggtggcggccaaggacgtccggccgggcgacacggtc
gtcgtgcgcaaggccggcgacgtcatccccgaggtcgtcggccccgtgctgtccgagcgt
cccgagggcctcgccgagtggacgttccccgacacgtgcccgcgctgcggtggtccgctc
gtgcggctggagggcgagggccaccacttctgcacgaacatcgactgcccggcccagcgc
accggcagcatcgagcacttcgcgtcgcgcggggccatggacatcgagggcctcggcgag
cagcgggtccacctcttcgtcgagatgggcctgctctccgacgtcggcgacatctactcg
ctcgacttcgatcggctcctcgggcgggagggcttcggcgagacgtcggtgcgcaacctg
cgcgacgccatcgaggcctcgaaggagcgtccgctcgccaacctgctggtcgggctcaac
atccgccacctggggcccaccggcgctcgggcgctggcccaggccttcgggcacctcgac
gccctcatggcggcctccgaggaggacatcgccgcggtcgacggcatcggccccacgatc
gcccagagcgtccacgcccacttcgcctcggaccgcaaccgtgccgtcgtcgagaagctg
cgggccgccgggctgaacctcgagggtccggccacccccgacgtgccccagacgctcgcc
ggcatgagcgtcgtggtcaccggcacgctcgacggctacagccgcgaggaggccgaggag
gccatcaccagccgcggcggcaagtcgccgggcagcgtgtcctcgcgcaccaccgccgtc
gtcgtcggcgaggggccgggggcctccaagctgagcaaggcggtcgacctcggcgtcccg
atcctcgacggcgagggcttcgagcgcctcctgtccaccggcgaggtgcggcccgtcgag
gcgccgcccacgtga
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