Amborella trichopoda: 18439029
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Entry
18439029 CDS
T02990
Name
(RefSeq) 110 kDa U5 small nuclear ribonucleoprotein component CLO
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
atr
Amborella trichopoda
Pathway
atr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
18439029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atr03041
]
18439029
Spliceosome [BR:
atr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
18439029
Complex C
U5 SnRNP specific factors
18439029
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFL1
EFG_III
MMR_HSR1
Roc
EF-G_D2
Septin
Ras
Motif
Other DBs
NCBI-GeneID:
18439029
NCBI-ProteinID:
XP_006849266
UniProt:
W1PLG4
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MDDSLYDEFGNYIGPDIDSDQDASDADDRPSDDDDEMPDAAAGASPSRAGSPENWLGEVA
EGEAPGQVVLAEDKKYYPTAQEVYGEGVEALVMDEDAQPLEQPIIKPPRNVKFEIGVKDS
STYVSTQFLLGLASNPSLVRNVALVGHLQHGKTVFMDMLVEQTHMIETFDPDSEKHMRYT
DTRIDEQERRVSIKAVPMSLVLEDSNAKSYLCNIFDTPGHVNFSDEMTAALRLADGAVVV
VDAAEGVMVNTERAIRHAIQERLPIVVVINKVDRLITELKLPPADAYHKLRHTLEVINDF
ISSFSTTAGGIQAIDPAAGNVCFASASAGWSFTLQSFAKLYVKLHGIPFDAARFASLLWG
DIYYHPNERTFKRKPPLSGGERSFVQFLLEPLYKIYSQVIGEHRKSVEVTLAELGVTLSN
AAYKLNVRPLLRLACSSIFGSATGFTDMLVEHIPSAKDAAIKKVEHIYTGPQDSLVVEAM
KDCDPSGPLMVNVTKLFPKSDCSVFDAFGRVYSGTIQTGQTVRVLGEGYSPEDEEDMTVK
EVTKLWVYQARYRLPISKAPAGSWVLIEGVDASIMKTATLCPEYMDEDIYIFRPLRFNTL
PVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLR
ELYSEVEVKVADPVVSFCETVVESSSIKCFAETPNKKNKITMLAEPLEKGLAEDIENGVV
SIDWPRKKLGDFFQSKYDWDLLAARSIWAFGPDKQGPNILLDDTLPSEVDKNMLNAVKDS
IVQGFQWGAREGPLCDEPIRNVKFKILDATIAPEPLHRGGGQIIPAARRVAYSAFLMATP
RLMEPVYYVEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPSYIVKAFLPVIESFGFET
DLRYHTQGQAFCVSVFDHWAIVPGDPLDKSVVLRPLEPAPVQHLAREFMVKTRRRKGMSE
DVSISKFFDDPMLLELARQDADLQHIL
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggatgacagtttatacgacgagttcgggaactacataggcccggacatcgactctgac
caagatgcttctgatgccgatgaccgaccttctgatgacgatgatgagatgcccgatgct
gcagctggcgcttcgccctcgcgcgcgggctccccggagaactggcttggagaggttgct
gaaggcgaagcccccggccaagtggtattggcagaagacaaaaaatactatcccactgcc
caagaggtctatggggagggcgttgaggcccttgtcatggacgaggatgcccagcccctc
gagcaaccgattataaaacctcctcgtaacgtcaagtttgagatcggtgtcaaggactcg
agcacttatgtctcgacacaattcctcttaggccttgcatcgaacccgtcgcttgtgcgg
aatgttgctctcgtagggcatttacagcatgggaagacagtgttcatggacatgctagtg
gagcagacccatatgattgagacattcgatccggacagtgagaagcacatgaggtacacc
gacacacgcattgacgagcaggaacgaagggtctctatcaaggccgttcccatgtcgttg
gtgcttgaggacagcaatgcaaaatcgtatctgtgcaatatatttgatacaccagggcat
gtcaacttctcggacgagatgactgctgctctcaggctggccgacggggctgtcgtagtt
gtggatgcagcagaaggggtcatggtgaacactgagagagctattcgccatgccattcag
gaaaggcttccgattgtagttgtaataaataaggtagataggctgataacggagctgaaa
ctaccaccagctgatgcataccacaaactaaggcacacgttagaagtgataaacgatttt
atctcttcgttctctaccactgcaggaggaatccaagccattgatccagctgctggaaat
gtttgttttgctagcgctagtgctggttggtctttcaccctacaatcctttgctaaattg
tatgtgaaactccatggcataccatttgatgctgctagatttgcatctttgctttgggga
gatatatattatcatccaaatgagaggacttttaagagaaaaccccctctaagtggaggt
gagagatcatttgtgcagtttttgcttgagcctttgtacaaaatatacagccaagtgata
ggagaacacaggaagagtgtggaggttactcttgcagagctgggtgttaccctaagtaat
gcagcatacaagttaaatgttaggccactcttaaggttggcttgtagctcgatttttgga
tcagccactggcttcactgatatgttggttgaacatatcccatctgcgaaagatgctgca
attaagaaggtagagcacatttataccgggcctcaggactctttagttgttgaggctatg
aaagactgtgatccttcaggtcccctcatggttaatgtaaccaagcttttccctaaatct
gactgcagtgtctttgatgcttttggtagagtttacagtggaaccatccaaactggtcag
actgtacgtgtccttggggaaggatattcacctgaagatgaagaggacatgactgttaaa
gaagttacaaaattgtgggtctatcaagcacgttatcgacttcctattagtaaagcacct
gctggttcttgggttctcattgaaggtgttgatgcttcgatcatgaagactgccactctt
tgtcctgagtatatggatgaagacatctacatatttcggcctctacgctttaacaccctt
ccagttgtgaaaacagccaccgaacccttgaatcccagtgagctgcccaaaatggttgaa
ggtctacgaaaaattagcaagagctatccacttgccataacaaaggtcgaggaatccggt
gaacacactattttggggactggggagttgtatttggattctattatgaaggatcttaga
gagctctattctgaagttgaagtcaaggtggctgatcctgtggtctctttctgtgaaact
gtggtggaatcctcatcaataaaatgctttgcagaaacgcccaacaagaaaaacaaaatc
accatgcttgcggaaccactggaaaagggattggcggaggatatagagaatggtgttgtc
agcatagattggcctcgaaagaaactcggtgactttttccaaagcaaatatgactgggat
ttgcttgcagcacggtctatatgggcttttggtccggataagcagggacccaacattctc
ctggacgatacacttcctagtgaagttgacaagaatatgctgaatgctgttaaggattca
attgttcaagggtttcagtggggtgctcgtgaagggcctctttgtgatgaacccattcgt
aatgtcaaattcaaaatattggatgctactattgcaccagagcccctgcatcgtggtggt
ggtcagataattcctgctgctcgtcgtgtagcatattcggccttccttatggcaacgcca
cgtttgatggaaccggtgtattatgtggagattcaaaccccgatagattgtgtttctgca
atttatacagtcttgtctcgaagaaggggacacgttacagccgatgttcctaagccaggg
accccttcttatattgttaaggcatttttgccagtcatagaatcctttgggtttgagact
gacttgagatatcacacccaagggcaggccttttgcgtttctgtatttgatcactgggcc
atagttcctggagatcctcttgacaaatctgtggtccttcgcccacttgaacctgcacct
gttcagcaccttgcacgagagttcatggtgaagacaaggcggcggaagggaatgagcgag
gatgtaagcatcagcaagttctttgatgaccctatgttgcttgagctagcaagacaggat
gctgaccttcaacacatactctaa
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