KEGG   Amborella trichopoda: 18440673
Entry
18440673          CDS       T02990                                 
Name
(RefSeq) DNA ligase 4
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
atr  Amborella trichopoda
Pathway
atr03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:atr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    18440673
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:atr03400]
    18440673
Enzymes [BR:atr01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     18440673
DNA repair and recombination proteins [BR:atr03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     18440673
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N BRCT_2 BRCT DNA_ligase_A_C PTCB-BRCT RNA_ligase DNA_ligase_IV Usher_TcfC mRNA_cap_enzyme
Other DBs
NCBI-GeneID: 18440673
NCBI-ProteinID: XP_020526887
LinkDB
Position
Unknown
AA seq 1242 aa
MSDETVKFSVLCSMFQALARNKSSVMKRKHFRTFLDHVYKSKEYFSAIRLILPSLDRERG
TYGLKESVLATCLIDALGISRESEDALRLINWRKGGAKTGPNAGNFALVAAEVLQRRQGM
TSGGLTIKEVNDLLDRLAAAENREQKTSVLSELIKKTNSVEMKWIVMIILKDLKLGISEK
SIFREFHTDAEDLFNVTCDLKLVCEKLKDRTQRNKRQDIEAGKAVRPQLAMRVADASSAW
KKLHGKQVVIECKFDGDRIQIHKNGNELCFFSRNFIDHPEYGHAMSSLILQNVLVERCIL
DGEMLVWDTSTNRFAEFGSNQEIAKASNDGIEGDRQLCYVAFDILYVGDTSVIHQSLRER
HELLRKVVQPVKGRLEILVPDGGLNVRRPSDEPCWSLIAYSVEDVEKFFKETIENRDEGI
VLKDLDSKWEPGDRSGKWLKLKPDYVHTGSDLDVLIIGGYFGSGHRGGEVAQFLVGLADR
ANPGTYPTRFLSFCRVGTGLSEDELDVLVNKLKPYFRKNENPKKAPNFYEVTNHSKERPD
VWIGNPEKSIILSITSDIRTIKTEVFASPYALRFPRIHRVRYDKPWHECLDVQSFVDLVH
SKDGTMQRDMEPGGLNNKGPKRKRPLRKGPNKMTTVVPSHFIQTDISRVKEESLLFTNMM
FYFVNVPPTYSVDFFHKMVVENGGSFSMNLNDSVTHCIAAERKGIKYQAAVLRGDVLHYS
WVLDCYSQKQLLHLQPKYYLFLSDSSKKKLKEEIDAFSDYYYWDLDVTDLRELFNKMDKV
DDSKEFAFYKKKCCPSEKWCQFQDCCIIDLKHVVSSTNTGVLNVRNSDSQIITDITSRRM
KLEVLMYGGQVTNNLSSATHLVIVSTTDFHVDCCALLESFPDSERRFLRNKRLHILRHKW
IEDCLEEGQKLQEDAYNLRPESVEWMLEPEGSDFGVSENLDTSQNQTCRIKSRQKPTIRE
TVKRKRRGGIPARSTRARRGRAVRISGNESENSDSHDELSFREQKEEQHQSVNAVHGDNM
EEGMVEAEGSDFDVSGNLDASKGRTVTASTHGKANGQKPTAHATIKRKIAGGIQARSTHS
RRGRAVRISGNESEKSDSHDALCLREQKEERCQSENVTHGDYIKEEYTIKDGKSPDREHV
KPYNAACGVNVEREARNQEGEKAEEKVERKATQVETNPGSMKDPVEAMLFDMIPSLGFKI
DETENASSMAGPDNEAMAWMDPTLLKKKRVSYKDVANELLND
NT seq 3729 nt   +upstreamnt  +downstreamnt
atgtcagatgaaacggtgaaattcagcgttctttgtagtatgtttcaggcccttgcgagg
aacaaatcttctgttatgaagcgaaagcatttccgcactttcttggatcatgtttacaaa
tcgaaagagtatttcagtgcaattcgcctcattctcccctctctagacagagagagagga
acatatggtttgaaggaatctgttctcgctacttgtctcatcgatgccctagggatttct
cgagaatcggaggatgcactacgcctcatcaattggcgaaagggtggggcaaaaactggg
ccaaatgctgggaattttgccttagttgctgctgaggttttacaacgcaggcaaggaatg
acctctggaggattaacaattaaagaggtgaacgatttgcttgatcgtttggcagcagct
gaaaatagggagcaaaagacatccgttctttctgagcttattaagaaaacgaattctgtt
gaaatgaagtggattgtcatgattatacttaaagatctaaaacttggaattagtgaaaag
agcatctttcgtgaatttcatactgatgctgaagacttgttcaatgtgacttgtgaccta
aaattagtatgcgaaaaactgaaagatcgaactcaacgaaacaagagacaggacatagaa
gctgggaaagctgtgcgccctcaattagctatgagagttgctgatgctagtagtgcatgg
aaaaagcttcatggaaaacaagtcgttattgagtgcaagtttgatggagatcgtattcaa
attcataagaatggaaatgaattatgcttcttttcgaggaatttcattgaccacccggag
tacggacatgccatgtcgagcttaatactgcaaaatgttctggtggaacggtgcatcctt
gatggggaaatgttggtctgggatacatctaccaaccgttttgcagaatttggctcgaat
caggaaatagcaaaggcctctaacgacggtatcgagggtgatcggcagttatgttatgtt
gcatttgatattctttatgttggagatactagtgttatccatcaaagcctcagagaacga
catgaacttcttcgaaaagttgtacaacctgtaaagggtcggttagaaattttagtgcct
gatggtggccttaatgttcgtcgtccctctgatgaaccgtgctggtctctcatagcttac
agtgtggaagatgtcgaaaagttttttaaagagaccattgagaacagggatgaagggata
gtgttaaaagatctagattcgaaatgggaacctggtgatcgtagtggaaaatggttaaaa
ctgaagcctgactatgtccatactggttctgatcttgatgtgctaattatagggggctat
tttgggtcagggcatcgtggtggagaggtagcacaatttttggttggtcttgcagatcgt
gcaaaccctggtacctatcccacaaggtttctctcattttgtcgtgttggtacgggtctt
tcggaagatgagcttgatgttctagtgaataaattgaagccttattttaggaaaaatgag
aacccaaagaaggcgccgaacttttatgaggtgacaaatcattccaaggaaagaccagat
gtttggattggcaaccctgaaaagtcaattatactttcaatcactagtgatataagaacc
ataaagacagaggtctttgcttcaccttatgctttgagattcccacgtattcatcgggtt
cgatatgataaaccatggcacgaatgccttgatgtacaatcattcgttgacttggtacat
tccaaagatggcaccatgcaaagagatatggagcccgggggcttgaataataaaggacca
aaacgtaaaaggccattgagaaaaggacccaataagatgaccacagtcgtgccttctcat
ttcattcaaacagacatctccagagtcaaggaagagagtttactgtttacaaacatgatg
ttctactttgtaaatgttcctcccacgtattctgtggatttctttcataaaatggttgtt
gagaatgggggcagtttctcaatgaatctgaatgattctgtaactcactgcatagcagct
gagaggaaagggatcaaataccaagctgcagtgcttcgtggagatgtcctacactactca
tgggttttggattgttactcacaaaagcagctcttgcatttgcaaccaaagtattacctg
tttctttcagactcttctaagaagaaattaaaagaagagatcgatgccttttcagattac
tattactgggatctggatgttaccgaccttagggagctcttcaataagatggacaaagtg
gatgactcaaaagaatttgctttctataagaagaaatgctgcccaagtgaaaaatggtgc
caattccaggattgctgcatcatcgacttaaaacacgttgtttcttcaactaatactggt
gttttgaacgtaaggaattcagattcccaaattatcacggatattacttcaaggaggatg
aagcttgaagttttgatgtatggtggacaagtaactaataacctgtcctctgctactcat
ttggtgattgtttcaacaacagactttcatgtggactgctgtgcgctgctcgagagtttt
ccagattcagagagacgtttcctgaggaataaaagattgcatattctaaggcacaaatgg
atagaagactgcttggaagagggtcagaaactgcaagaggatgcatataatttgaggcca
gaaagtgtggaatggatgttagaaccagaaggatctgattttggtgtgtcggagaatttg
gatacaagccaaaaccaaacttgcagaataaaaagcagacagaaaccaacaattcgtgag
actgtaaaaagaaaaagaaggggtggaatcccagcacgaagtactcgtgctaggcgtggc
cgagctgttagaatcagtggaaatgaatccgagaacagtgattctcatgatgaattaagc
tttagggaacaaaaagaagaacaacatcagtctgtcaatgctgtacatggtgacaacatg
gaggaggggatggtagaagcagaaggatctgattttgatgtatcgggaaatttggatgca
agcaaaggccgaacagttactgcttcaactcacgggaaagcaaatggacagaaaccaaca
gctcatgcgactataaaaagaaaaatagcaggtggaattcaagcacgaagtactcactct
agacgtggtcgagcagttagaatcagtggaaatgaatctgagaaaagtgattctcatgat
gcattgtgccttagggagcaaaaagaagaaagatgtcagtctgaaaatgttacacatggt
gactacataaaggaggaatatactatcaaagatggcaagagccctgatagagagcatgta
aagccttataacgctgcatgtggtgtaaacgtagagagagaagcacgtaaccaggaaggt
gaaaaagcagaagaaaaagtagaaaggaaggccacgcaagtagaaacaaatccaggtagt
atgaaagatccagttgaggctatgctgtttgatatgatacctagccttggcttcaagatt
gatgaaacagagaatgcctcgtcaatggctgggcccgataatgaagcgatggcttggatg
gacccaaccctattaaaaaagaagagagtgagttataaggatgtagctaatgagctgcta
aatgactaa

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