Amborella trichopoda: 18440673
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Entry
18440673 CDS
T02990
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
atr
Amborella trichopoda
Pathway
atr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
18440673
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
atr03400
]
18440673
Enzymes [BR:
atr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
18440673
DNA repair and recombination proteins [BR:
atr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
18440673
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
Usher_TcfC
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
18440673
NCBI-ProteinID:
XP_020526887
LinkDB
All DBs
Position
Unknown
AA seq
1242 aa
AA seq
DB search
MSDETVKFSVLCSMFQALARNKSSVMKRKHFRTFLDHVYKSKEYFSAIRLILPSLDRERG
TYGLKESVLATCLIDALGISRESEDALRLINWRKGGAKTGPNAGNFALVAAEVLQRRQGM
TSGGLTIKEVNDLLDRLAAAENREQKTSVLSELIKKTNSVEMKWIVMIILKDLKLGISEK
SIFREFHTDAEDLFNVTCDLKLVCEKLKDRTQRNKRQDIEAGKAVRPQLAMRVADASSAW
KKLHGKQVVIECKFDGDRIQIHKNGNELCFFSRNFIDHPEYGHAMSSLILQNVLVERCIL
DGEMLVWDTSTNRFAEFGSNQEIAKASNDGIEGDRQLCYVAFDILYVGDTSVIHQSLRER
HELLRKVVQPVKGRLEILVPDGGLNVRRPSDEPCWSLIAYSVEDVEKFFKETIENRDEGI
VLKDLDSKWEPGDRSGKWLKLKPDYVHTGSDLDVLIIGGYFGSGHRGGEVAQFLVGLADR
ANPGTYPTRFLSFCRVGTGLSEDELDVLVNKLKPYFRKNENPKKAPNFYEVTNHSKERPD
VWIGNPEKSIILSITSDIRTIKTEVFASPYALRFPRIHRVRYDKPWHECLDVQSFVDLVH
SKDGTMQRDMEPGGLNNKGPKRKRPLRKGPNKMTTVVPSHFIQTDISRVKEESLLFTNMM
FYFVNVPPTYSVDFFHKMVVENGGSFSMNLNDSVTHCIAAERKGIKYQAAVLRGDVLHYS
WVLDCYSQKQLLHLQPKYYLFLSDSSKKKLKEEIDAFSDYYYWDLDVTDLRELFNKMDKV
DDSKEFAFYKKKCCPSEKWCQFQDCCIIDLKHVVSSTNTGVLNVRNSDSQIITDITSRRM
KLEVLMYGGQVTNNLSSATHLVIVSTTDFHVDCCALLESFPDSERRFLRNKRLHILRHKW
IEDCLEEGQKLQEDAYNLRPESVEWMLEPEGSDFGVSENLDTSQNQTCRIKSRQKPTIRE
TVKRKRRGGIPARSTRARRGRAVRISGNESENSDSHDELSFREQKEEQHQSVNAVHGDNM
EEGMVEAEGSDFDVSGNLDASKGRTVTASTHGKANGQKPTAHATIKRKIAGGIQARSTHS
RRGRAVRISGNESEKSDSHDALCLREQKEERCQSENVTHGDYIKEEYTIKDGKSPDREHV
KPYNAACGVNVEREARNQEGEKAEEKVERKATQVETNPGSMKDPVEAMLFDMIPSLGFKI
DETENASSMAGPDNEAMAWMDPTLLKKKRVSYKDVANELLND
NT seq
3729 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgaaacggtgaaattcagcgttctttgtagtatgtttcaggcccttgcgagg
aacaaatcttctgttatgaagcgaaagcatttccgcactttcttggatcatgtttacaaa
tcgaaagagtatttcagtgcaattcgcctcattctcccctctctagacagagagagagga
acatatggtttgaaggaatctgttctcgctacttgtctcatcgatgccctagggatttct
cgagaatcggaggatgcactacgcctcatcaattggcgaaagggtggggcaaaaactggg
ccaaatgctgggaattttgccttagttgctgctgaggttttacaacgcaggcaaggaatg
acctctggaggattaacaattaaagaggtgaacgatttgcttgatcgtttggcagcagct
gaaaatagggagcaaaagacatccgttctttctgagcttattaagaaaacgaattctgtt
gaaatgaagtggattgtcatgattatacttaaagatctaaaacttggaattagtgaaaag
agcatctttcgtgaatttcatactgatgctgaagacttgttcaatgtgacttgtgaccta
aaattagtatgcgaaaaactgaaagatcgaactcaacgaaacaagagacaggacatagaa
gctgggaaagctgtgcgccctcaattagctatgagagttgctgatgctagtagtgcatgg
aaaaagcttcatggaaaacaagtcgttattgagtgcaagtttgatggagatcgtattcaa
attcataagaatggaaatgaattatgcttcttttcgaggaatttcattgaccacccggag
tacggacatgccatgtcgagcttaatactgcaaaatgttctggtggaacggtgcatcctt
gatggggaaatgttggtctgggatacatctaccaaccgttttgcagaatttggctcgaat
caggaaatagcaaaggcctctaacgacggtatcgagggtgatcggcagttatgttatgtt
gcatttgatattctttatgttggagatactagtgttatccatcaaagcctcagagaacga
catgaacttcttcgaaaagttgtacaacctgtaaagggtcggttagaaattttagtgcct
gatggtggccttaatgttcgtcgtccctctgatgaaccgtgctggtctctcatagcttac
agtgtggaagatgtcgaaaagttttttaaagagaccattgagaacagggatgaagggata
gtgttaaaagatctagattcgaaatgggaacctggtgatcgtagtggaaaatggttaaaa
ctgaagcctgactatgtccatactggttctgatcttgatgtgctaattatagggggctat
tttgggtcagggcatcgtggtggagaggtagcacaatttttggttggtcttgcagatcgt
gcaaaccctggtacctatcccacaaggtttctctcattttgtcgtgttggtacgggtctt
tcggaagatgagcttgatgttctagtgaataaattgaagccttattttaggaaaaatgag
aacccaaagaaggcgccgaacttttatgaggtgacaaatcattccaaggaaagaccagat
gtttggattggcaaccctgaaaagtcaattatactttcaatcactagtgatataagaacc
ataaagacagaggtctttgcttcaccttatgctttgagattcccacgtattcatcgggtt
cgatatgataaaccatggcacgaatgccttgatgtacaatcattcgttgacttggtacat
tccaaagatggcaccatgcaaagagatatggagcccgggggcttgaataataaaggacca
aaacgtaaaaggccattgagaaaaggacccaataagatgaccacagtcgtgccttctcat
ttcattcaaacagacatctccagagtcaaggaagagagtttactgtttacaaacatgatg
ttctactttgtaaatgttcctcccacgtattctgtggatttctttcataaaatggttgtt
gagaatgggggcagtttctcaatgaatctgaatgattctgtaactcactgcatagcagct
gagaggaaagggatcaaataccaagctgcagtgcttcgtggagatgtcctacactactca
tgggttttggattgttactcacaaaagcagctcttgcatttgcaaccaaagtattacctg
tttctttcagactcttctaagaagaaattaaaagaagagatcgatgccttttcagattac
tattactgggatctggatgttaccgaccttagggagctcttcaataagatggacaaagtg
gatgactcaaaagaatttgctttctataagaagaaatgctgcccaagtgaaaaatggtgc
caattccaggattgctgcatcatcgacttaaaacacgttgtttcttcaactaatactggt
gttttgaacgtaaggaattcagattcccaaattatcacggatattacttcaaggaggatg
aagcttgaagttttgatgtatggtggacaagtaactaataacctgtcctctgctactcat
ttggtgattgtttcaacaacagactttcatgtggactgctgtgcgctgctcgagagtttt
ccagattcagagagacgtttcctgaggaataaaagattgcatattctaaggcacaaatgg
atagaagactgcttggaagagggtcagaaactgcaagaggatgcatataatttgaggcca
gaaagtgtggaatggatgttagaaccagaaggatctgattttggtgtgtcggagaatttg
gatacaagccaaaaccaaacttgcagaataaaaagcagacagaaaccaacaattcgtgag
actgtaaaaagaaaaagaaggggtggaatcccagcacgaagtactcgtgctaggcgtggc
cgagctgttagaatcagtggaaatgaatccgagaacagtgattctcatgatgaattaagc
tttagggaacaaaaagaagaacaacatcagtctgtcaatgctgtacatggtgacaacatg
gaggaggggatggtagaagcagaaggatctgattttgatgtatcgggaaatttggatgca
agcaaaggccgaacagttactgcttcaactcacgggaaagcaaatggacagaaaccaaca
gctcatgcgactataaaaagaaaaatagcaggtggaattcaagcacgaagtactcactct
agacgtggtcgagcagttagaatcagtggaaatgaatctgagaaaagtgattctcatgat
gcattgtgccttagggagcaaaaagaagaaagatgtcagtctgaaaatgttacacatggt
gactacataaaggaggaatatactatcaaagatggcaagagccctgatagagagcatgta
aagccttataacgctgcatgtggtgtaaacgtagagagagaagcacgtaaccaggaaggt
gaaaaagcagaagaaaaagtagaaaggaaggccacgcaagtagaaacaaatccaggtagt
atgaaagatccagttgaggctatgctgtttgatatgatacctagccttggcttcaagatt
gatgaaacagagaatgcctcgtcaatggctgggcccgataatgaagcgatggcttggatg
gacccaaccctattaaaaaagaagagagtgagttataaggatgtagctaatgagctgcta
aatgactaa
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integrated database retrieval system