Amborella trichopoda: 18444015
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Entry
18444015 CDS
T02990
Name
(RefSeq) transcription factor PIF1 isoform X1
KO
K16189
phytochrome-interacting factor
Organism
atr
Amborella trichopoda
Pathway
atr04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
18444015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
atr03000
]
18444015
Transcription factors [BR:
atr03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
18444015
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Motif
Other DBs
NCBI-GeneID:
18444015
NCBI-ProteinID:
XP_011627020
LinkDB
All DBs
Position
Unknown
AA seq
500 aa
AA seq
DB search
MNHCVPDWDMEDDPLPSSSDFQPSSGHLKKPSAPSEDELVELVWQDGQVMMQKTSRRAPP
MAGKPETIVRRAEAIAGNSGFPAEPLLENPLFIQEDEMAAWLHCSPLDDFCSELFTGNVP
QEKTKDHHGSSHAENSGFGEGKRVTQFSQFLRRDAVTGAVGSVCGGESTVVDSNDTVTAA
AATAPVIGSGKWSQLQVGSSCLEMQAACEATSSGGSGAAGGGSECRKRKGREGDEAECQS
EDVESFDGKKASQRSATARRTRAAEVHNLSERRRRDRINERMRALQELIPHCNKSDKASM
LDEAIEYLKTLQLQVQMMSMGCAMPPMMLPGIQQYVTPMGMGMGVGMGMGMGMEMAAAGL
SRPLMPFSPMHTHPHAPILPVMHGHGASGHSSSRLPLPPLRVSATQVADTPSHQASNLPI
PHPQEVGPSHVGQQNQTPHNSNFLDAPYPYYMGFHPMQMPPQAMNILPYSSNTHIMQQNQ
PPSQSNPSAIAETSNNAKSG
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgaatcattgtgttcccgactgggacatggaggacgacccccttccgtcctcatcagat
ttccagccctcttcaggccacctcaagaagccctctgcaccttctgaggacgagttagtt
gagctggtatggcaagacggccaggtcatgatgcagaagacctctcggcgggccccacca
atggctggaaaaccggaaacaattgtgagaagagcggaagccattgctggaaactctggt
tttccagcggagccattgctggaaaacccgctattcatccaagaggacgagatggcagct
tggctccattgctcaccattggatgacttttgctctgagcttttcacaggtaatgtccct
caagaaaagaccaaggaccatcatggttcttcacatgcggagaactcaggctttggggag
ggcaaaagggtcacacaattctcgcagtttttgcggcgggatgcggtgacaggggctgtg
ggatcggtgtgtgggggggaatccacagtggtcgattcaaatgatacagtgactgcagca
gcagcaacggcaccggtgatagggtcagggaagtggtcccagctgcaagtaggcagcagc
tgcctagagatgcaggcggcatgcgaggccacatcttcggggggttcaggggcagctggc
ggcggtagtgagtgtaggaagaggaaggggcgtgaaggtgacgaggctgagtgccagagc
gaggatgttgagtcgtttgatgggaagaaggcttcacaacgatctgcaacagctcgaaga
actcgtgccgcagaggttcataatctctcggaaaggaggaggcgggacaggatcaatgag
cggatgagagccctgcaggagctcatacctcattgtaacaagtcggataaagcctcaatg
cttgatgaggcaatcgagtacctgaagacacttcagttacaagtgcagatgatgtctatg
ggctgtgcaatgccacctatgatgctccctggaatccaacaatatgtgacacctatgggt
atggggatgggggtgggtatgggcatggggatgggtatggagatggcagccgctggtttg
agccgacctcttatgccattctctcccatgcatacacatccacatgcgcccatccttcca
gtcatgcatggacatggtgcatcagggcattcaagttcgaggcttcctctacctccgcta
cgtgtgtctgctacccaagttgctgatacaccttctcatcaagcaagcaacctgccaatc
ccacatccccaagaggtcggtcctagccatgttggtcaacagaaccaaacgccccataac
tccaattttcttgatgctccttatccttactacatgggctttcatcctatgcaaatgcct
cctcaggcaatgaacatactaccttatagtagtaacacccatatcatgcagcaaaaccag
ccaccttcccagtcaaaccccagcgcaatagctgagacgtctaacaatgccaaatcaggt
tga
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