KEGG   ORTHOLOGY: K16189
Entry
K16189                      KO                                     
Symbol
PIF, PIL
Name
phytochrome-interacting factor
Pathway
map04075  Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:ko00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04075 Plant hormone signal transduction
    K16189  PIF, PIL; phytochrome-interacting factor
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors
    K16189  PIF, PIL; phytochrome-interacting factor
Transcription factors [BR:ko03000]
 Eukaryotic type
  Basic helix-loop-helix (bHLH)
   HLH domain only
    K16189  PIF, PIL; phytochrome-interacting factor
Genes
ATH: AT2G20180(PIL5) AT2G43010(PIF4) AT2G46970(PIL1) AT3G59060(PIL6) AT3G62090(PIL2) AT4G00050(UNE10) AT4G28790 AT4G28800 AT4G28811 AT5G61270(PIF7)
ALY: 110226458 110226459 9300804 9303509 9309044 9312728 9314326 9314506 9317951 9318164 9322061
CRB: 17876685 17878652 17880772 17881688 17885547 17886051 17888247 17889957 17892930
CSAT: 104699486 104702085 104705260 104711516 104720081 104721990 104726714 104727692 104730450 104733247 104733248 104737773 104738621 104747920 104749110 104762238 104766821 104781817 104782811 104783283 104784608 104785058 104788144 104792183 104793231 109124973
EUS: EUTSA_v10001974mg EUTSA_v10004458mg EUTSA_v10005929mg EUTSA_v10006385mg EUTSA_v10016715mg EUTSA_v10027582mg EUTSA_v10028687mg
BRP: 103830338 103836954 103841766 103842035 103854095 103855208 103858039 103858375 103858879 103860578 103866034 103866414 117126501 117132419
BNA: 106353303 106357954 106368315 106368507 106372902 106372904 106375567 106388298 106388694 106394464 106397554 106407077 106416114 106431745 106438383 106439932 106442070 106454412 111199774 111200351 111205541 125593371 125606859
BOE: 106296105 106297185 106298580 106301311 106302174 106312330 106312771 106316936 106328122 106328266 106337536 106339877
RSZ: 108808869 108810584 108814735 108827151 108829838 108837385 108839524 108844577 108845186 108849620 108856357 108861392 108863609 130494791 130498885 130509622
THJ: 104801373 104801484 104802112 104803391 104814712 104817425 104818329 104820055 104820056 104820060
 » show all
Reference
  Authors
Moon J, Zhu L, Shen H, Huq E
  Title
PIF1 directly and indirectly regulates chlorophyll biosynthesis to optimize the greening process in Arabidopsis.
  Journal
Proc Natl Acad Sci U S A 105:9433-8 (2008)
DOI:10.1073/pnas.0803611105
  Sequence
[ath:AT2G20180]
Reference
  Authors
Khanna R, Shen Y, Toledo-Ortiz G, Kikis EA, Johannesson H, Hwang YS, Quail PH
  Title
Functional profiling reveals that only a small number of phytochrome-regulated early-response genes in Arabidopsis are necessary for optimal deetiolation.
  Journal
Plant Cell 18:2157-71 (2006)
DOI:10.1105/tpc.106.042200
  Sequence
[ath:AT2G46970]
Reference
  Authors
Hornitschek P, Kohnen MV, Lorrain S, Rougemont J, Ljung K, Lopez-Vidriero I, Franco-Zorrilla JM, Solano R, Trevisan M, Pradervand S, Xenarios I, Fankhauser C
  Title
Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling.
  Journal
Plant J 71:699-711 (2012)
DOI:10.1111/j.1365-313X.2012.05033.x
  Sequence
Reference
  Authors
Penfield S, Josse EM, Halliday KJ
  Title
A role for an alternative splice variant of PIF6 in the control of Arabidopsis primary seed dormancy.
  Journal
Plant Mol Biol 73:89-95 (2010)
DOI:10.1007/s11103-009-9571-1
  Sequence
[ath:AT3G62090]
Reference
  Authors
Leivar P, Monte E, Al-Sady B, Carle C, Storer A, Alonso JM, Ecker JR, Quail PH
  Title
The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels.
  Journal
Plant Cell 20:337-52 (2008)
DOI:10.1105/tpc.107.052142
  Sequence
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