Amborella trichopoda: 18447164
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Entry
18447164 CDS
T02990
Name
(RefSeq) ABC transporter I family member 21
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
atr
Amborella trichopoda
Pathway
atr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
atr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
18447164
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atr03019
]
18447164
Messenger RNA biogenesis [BR:
atr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
18447164
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
ORC-CDC6-like
nSTAND3
AAA_28
AAA_15
AAA_25
AAA_5
AAA
NACHT
AAA_22
AAA_23
AAA_13
PduV-EutP
AAA_18
AAA_33
AAA_30
AAA_16
SRP54
Zeta_toxin
DUF3584
AAA_24
Motif
Other DBs
NCBI-GeneID:
18447164
NCBI-ProteinID:
XP_006857327
UniProt:
U5D8I7
LinkDB
All DBs
Position
Unknown
AA seq
295 aa
AA seq
DB search
MGFEKEALQFQLTNSIEVSALQFSYDDQPPLFSNFNLHISPGSRCLLIGANGSGKTTLLR
ILAGKHMVGGRDVVRVIGHSAFHDTQLVCSGELAYLGGSWSKTVGSAGEIPLQGDFSAEH
MIFGVEGVDPERREKLIDLLDIDLQWRMHKVSDGQRRRVQICMGLLHPFQVLLLDEVTVD
LDVVARMDLLDFFKEECEGRGATIVYATHIFDGLESWATHVAYIQDGELRRSEKLADVNE
MKSAKNLYSVVESWLRSETKTMTKKAFNPASHVRRVPTVNDASPFRSSRHMAYYR
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atggggtttgagaaagaggccctgcaattccaattaacaaattcgatagaagtatctgct
cttcaattctcctatgatgatcagcccccattgttctccaattttaacctacatatttcc
cctggctctcgatgcctacttattggcgctaatggatctgggaagactactctattaagg
atattagcaggaaagcatatggttggaggcagggatgtcgtaagagtgattggtcattct
gcatttcatgatacacagcttgtgtgcagtggtgagcttgcatatcttggaggttcttgg
agtaaaactgttggttctgctggtgaaattcctctccaaggtgatttctctgccgaacac
atgatatttggagttgaaggagtagatcctgaaaggagagagaagttgattgatctgctt
gatattgatctgcagtggcgaatgcataaagtgtctgatgggcagcgacgcagggtccaa
atttgtatggggcttcttcatccatttcaggtgcttctgcttgatgaagtcacagtcgat
ctggatgttgttgctaggatggatttacttgacttcttcaaagaagaatgtgaagggaga
ggtgctaccattgtctatgccacccatatctttgatgggttagagtcctgggctactcat
gtggcatacattcaagatggtgaattgaggcgttcagagaagcttgcagacgtgaatgag
atgaaaagcgcgaagaatctatactctgttgttgaatcatggcttcgatccgaaaccaag
accatgacaaagaaggccttcaatcccgcaagccatgtgcgcagggtccccacagttaat
gatgcttctccctttagatcatctcgacacatggcttactatcgttga
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