Agelaius tricolor (tricolored blackbird): 139585265
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Entry
139585265 CDS
T10815
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
atrc Agelaius tricolor (tricolored blackbird)
Brite
Chromosome and associated proteins [BR:
atrc03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
139585265 (SMCHD1)
DNA repair and recombination proteins [BR:
atrc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
139585265 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
139585265
NCBI-ProteinID:
XP_071273989
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All DBs
Position
Unknown
AA seq
2031 aa
AA seq
DB search
MAAAAGGGRAPRRPALLTPRGNGDRTVFLFDRRREQADPDEKVLSYGKDNYRAFRSAVCQ
AFGIPSDEIFVITTTNRKEISEDNFSELVHDGVTLYLLQSVDQMLLLATKERIDFLPHYD
TLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSQNTGIRSIQIKLLFDDSQGKPAVAV
IDNGSGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQA
VFFVGQSARMISKPAASQDVHELVLSKEDFEKKEKNKEAIYTGFIRNRKPSDSTHITSDD
ERFLHNLILEERHKESFTAVVITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPKGNEA
NAVTKEISPFNNIDIQISMFEKGKVPKIVNLREIKDDMQTLYINTAADSFEFKAHVEEEG
IVEGIIRYHPFLYDKETYPDDPCFPSRLNDDDDDDCFLVEKGARGKRPIFECFWNGRLIP
YTTVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLF
TRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITVRTDVLSKRMQSPWTMYAA
IEWDGKTYKTGQLVKTTKTHPIFYGSIEKFYLYGDHDGDIFATGGEVQIALEPQALYAET
KIIPISKLDRTVSDKVVKKYIEDEMARLPDKLSVTWPEGDELLPNETRFAGTPIGALRIE
ILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTENKEIISHISQHGGKWPYWFKKMEN
LQKLGNYSLKLQVVLNESNADTYAGRPLPSKVFKFTIVEGKPEKFLVGLLELPFRIGVPF
SIPLELQDEFGHTTHLTNRIRPILEASGLTLKHDDIPVATKCVIKGVTAKGCVNSCQGKN
FNLKITLPGLKEDTQVIKIRLQPGPPRQLKVKPDSEILKIENGTAFPFQVEVLDESGNIT
AQPELIVHCKFLGASDLPVYSVDCSNGGTNILTGPVIHVQNIKKDQILKARFEVLNCKDV
PPVEKIIKLLPSSHVARLQVLSMNGQKALQIKHQDEISCVAGQVMNKLIFQMYDEAEREI
PITAAAAEKIKVNWTPKIDRELLMQGLLPDVKVPTSVKDARYCLITYLDEHVSLESAFTV
RPVPDEPKHIKCKLKGSNTLQMGEELQSEIDVMITDQFGNQVQTVTSACVNSLGVSGPGL
DKSNLKITWQESTQTMKVKGIRYKPCLLGSKELCFAWREFSDFIRVNLVAGSPAKLQLVD
WPELEKPVAVINGRELQRPLIVQLCDQWGNPTPEPNVKINLTKSNNLKLVPSNQQHKTDD
TGRANLGVFSIHAPRGEHILQIKASYNKAILDCLVIKINVLPDPEKPICLNVKYDKSPSF
PAGGTFPDFMVNVLSEDDTIIKNINPARISMKMWEAQSSRIRTPVDVTTFSCSKVKDDKE
DGFFYFRDKMVPERVGTYMIQFTFAMDKTNMLNSEQIIIEVVPNDPVRLLPDSLPATPAV
SNVRALTSRTLVKDLYLHLMDEYNNHTGLDLVGRIIAKIKSPNEEDIEIPQFQGKVNTVE
FPLENGSAEINLVLAEDSPGRDSTEYILVFEPHLPVLKKPLEPYCLSFMFYNDSKKQQLM
ATLTREKDQLSKSIDLYRKMFDTTNQLVAEMKCQVKEAETREALLKNELKKHQIEIPQTN
TLQYVDSLLKKKMLEQEGVMKQPRRTCTLPNYPKGNQDILGKIAHLAQIEDNEAAKVISW
HLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWNRPLPHLRNGRTFFRP
IGNPVFARDLLTFPDNIEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTRE
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTISAQIDLLQQYRAAVIKFDNVN
KDLDLHLQSLNTPEMQKRKQELAEQEKSLKLVKQKLGMTPALSDKGAESLLQPIILDISD
TPIPSKRMRRDTVKKLYSSEEWISSSAKQQQQQELQVAPSELNGTPRKRKA
NT seq
6096 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcggcgggaggcggccgcgcacctcgcaggccggcgctgctgacccctcgc
ggcaacggggaccgcaccgtgttcctcttcgaccggcgccgggagcaggcggacccggac
gagaaagtgctcagctacggcaaggacaactaccgcgctttccgcagcgccgtctgccag
gcatttggcataccttctgatgaaatctttgttatcaccacaacaaataggaaggaaatc
tctgaagataacttcagcgagcttgttcacgatggagttactttatatctgctgcagtca
gttgatcaaatgttgcttttggcaaccaaggagcgaattgactttctgccccactatgac
acacttgtcaaaagtggcatgtacgagtactatgccagcgagggccaaaatcctttgcca
tttgcccttgctgaattgattgacaattctctatcagctacctctcaaaatactggcatt
cggagtatacagataaaattgctgtttgatgattcccaaggaaaaccagctgttgctgtg
attgataatggaagtggaatgacttctaaacagcttaacaactgggctgtatatagattg
tccaagtttacaagacaaggtgactttgaaagtgatcactcaggatacgtgcgtcctttg
ccagtgcctcgtagtttaaatagtgatatctcatattttggagttggaggcaagcaagca
gtgttcttcgtgggacagtctgccagaatgataagcaaacctgcagcatctcaggatgtt
catgaacttgtcctttctaaagaggattttgaaaagaaggagaaaaacaaagaagcaata
tatactggattcattcgaaacagaaagccatctgattctactcacatcacaagtgatgat
gaaagatttcttcataatctaatattagaagaaaggcataaagagagtttcacagcagtt
gtcattacaggtgtacaaccagatcacatgcagtacttgaaaaactactttcatctttgg
acaaggcagctggcacatatctatcactattatatccatggaccaaaaggaaatgaagct
aatgctgtaacaaaggaaataagccctttcaacaacattgatattcagatttcaatgttt
gaaaagggaaaagtgccaaagattgtcaatctgagggagatcaaagatgacatgcagaca
ttgtatataaacactgcagcagatagttttgagttcaaggcacatgttgaagaagaaggt
atagttgaaggcatcatccgataccatcccttcctttatgataaagaaacataccctgat
gatccatgttttccatcaagattaaatgatgatgacgacgatgactgttttttagtagaa
aaaggtgccagaggaaaaaggcctatttttgaatgtttttggaatggaagattaatacca
tacacaactgtggaagattttgactggtgcgctcctccaaagaagagaggattggcacca
attgaatgctacaacagaatttctggtgcattgtttaccaatgataagttccaggtcagc
acaaacaaactcactttcatggatctggagctgaagctaaaggataagaatactttgttc
acaagaatcttcaatggacaggagcagcgaatgaaaattgacagagaatttgctctgtgg
ctcaaagactgtcatgaaaaatatgacaaacagataaaattcacagtctttaaaggaata
actgtacgtactgatgtattatccaaaagaatgcagagcccttggacaatgtatgctgca
atagagtgggatggaaaaacatacaaaactggacagctggtgaaaactactaagactcat
ccaatattctatggaagcattgagaaattttacttgtatggggaccatgatggggatata
tttgccactgggggagaggttcagattgctttggaaccacaggcgttgtatgctgaaaca
aaaattattccaatctcaaaacttgacagaacagtgtctgacaaagttgttaaaaaatac
atagaggatgaaatggctagacttcctgataaattatcagtaacatggcctgaaggagat
gagttgttaccaaatgaaacaagatttgctggtacaccaataggagcattaagaatagaa
attttaaataaaaaaggagaagcaatgcaaaaacttccaggtacaagccacggaggttca
aagaaacttcttgttgaactcaaagttattttgcattcacctactgagaataaagaaata
atttcccatatcagtcagcatggaggcaagtggccatactggtttaaaaaaatggaaaat
cttcagaaacttggtaactactccttgaaactgcaagtagtgttgaatgaaagtaatgca
gacacttacgcaggaaggcctctgccatctaaagtatttaaatttactattgtagagggc
aaaccagagaaatttttggtgggtctcttggagcttccttttcgaattggagtacctttt
agtattcctttggaattgcaggatgaatttggtcatacaacacacttgacaaatcgcatt
agaccaattctggaagctagtggattaacactgaagcatgacgacatacctgtggcaaca
aagtgtgtcattaagggtgttactgctaaaggctgtgtaaatagttgccagggcaagaac
tttaatctcaagattactcttcctggtttgaaagaagatacacaagtcattaaaataaga
ttgcagcctggccctcctcgtcaattgaaagtaaaaccagattcagaaattctaaagatt
gaaaatggtacagcttttccctttcaggttgaagtactggatgaatcaggaaatataaca
gcacagccagagttgattgttcattgtaagtttttaggtgcttcagaccttcctgtgtat
tctgtggactgcagtaatggaggaacaaacattttaactggtccagttatacatgtacag
aatatcaaaaaagaccagatactgaaagcaaggtttgaagtacttaattgcaaagatgtg
ccaccagtggaaaagattataaaacttcttcctagcagtcatgttgcaagactacaggtc
ttaagtatgaatggacaaaaagctcttcagattaaacatcaggatgaaatcagttgtgtt
gctggccaagtcatgaataaacttatatttcagatgtatgatgaagcagaaagggaaata
cccataactgcagctgctgcagaaaaaatcaaggtcaactggacacctaaaattgacaga
gagctgttgatgcagggattattaccagatgtaaaagtaccaacttcagtaaaagatgca
cgctactgtctaattacttaccttgatgagcatgtgtctttggaaagtgcattcacagtc
agaccagttcctgatgaacccaaacacattaaatgtaaactaaaaggctcaaacacactg
cagatgggtgaagaactgcagagtgaaatcgatgtaatgattacagatcagtttggaaat
caagttcagacagtgacatctgcatgtgtaaattccctaggagtttctgggcctggactc
gataaatcaaatttgaaaataacttggcaggaaagtactcagacaatgaaagtaaaaggt
attcgatacaaaccctgtttacttggaagcaaagaattgtgctttgcttggcgtgagttt
tctgactttatcagagtgaatttggtagcaggatccccagctaaattgcagcttgtggat
tggccagagttagaaaagcctgttgcagtgattaatggtagagaattgcagaggcccctt
attgttcagttgtgtgatcagtggggaaatccaactcctgaacctaatgtcaaaatcaac
ctgacaaagagtaacaacttaaagcttgttccttcaaaccagcagcataaaacagatgac
actggtagggctaacctaggagtttttagtattcatgcacctaggggagagcacatttta
cagattaaagcctcatacaacaaggccatattagattgtcttgtaatcaaaataaatgtc
ctgcctgatcctgagaaacctatctgcctgaatgttaaatatgacaaaagcccttctttt
ccagcaggaggtacttttcctgattttatggttaatgttctttctgaagatgacaccatt
attaaaaatattaatccagcacggatttctatgaaaatgtgggaagcacagagcagccgg
attaggacaccagttgatgttacaacgtttagctgtagtaaggtgaaggatgacaaggaa
gatggcttcttttacttcagggataaaatggtcccagagagggtaggcacttacatgatc
cagtttacctttgcaatggataagacaaatatgctcaacagtgaacagattataattgaa
gttgtacctaatgaccctgtacgcttgttacctgattctttaccagctactccagcagtt
tccaatgttcgagctcttaccagccgtacactggtcaaggatttatacctccatttaatg
gatgaatacaacaaccacactggacttgatctagttggcagaataatagcaaaaattaaa
agccccaatgaagaagatattgagatcccgcagtttcaggggaaagtcaatacagtagag
tttccattggagaatggatcagctgaaattaatttagtgctggctgaagacagtcctgga
agagatagcactgaatatattcttgtctttgagccacatctgccagttttgaaaaaacct
ttggaaccatattgtctctcatttatgttttacaatgattccaagaagcagcagctgatg
gcaacactgaccagggagaaagaccaattatctaagtccatagatctttacagaaagatg
tttgatactacaaatcagcttgtagctgaaatgaaatgtcaggttaaagaagctgaaaca
cgagaagctctcctgaagaatgaactgaaaaagcaccaaattgaaataccacagacaaac
acacttcagtatgtggattctcttctgaaaaaaaagatgttggaacaagaaggagtaatg
aagcagccaaggagaacttgcaccctcccaaactatccaaaaggcaaccaggatattcta
ggcaagattgcacatttagctcaaattgaggataatgaagcagcaaaagtcatctcttgg
cacctggcaagtgacatggactgtgtagtcacactgaccacggaagctgctcgttctatc
ttcgatgaaactcaaggtcgacaacaagtgttacctcttgattccatttacaagaagaca
cttccagattggaacagacctttacctcacttgagaaatggaagaaccttcttcagacct
attggaaatcctgtatttgccagagatctgttaacatttccagataacatagaacactgt
caaacagtgtttggtatgctcttgggtgatactatcattatagataacttggatgctgcc
aaccactacagaaaagaggttgtaaaaattacacactgccctaccttgctgactagggaa
ggagacaggattcgcagcaatggaaaatttggaggcctgcagaataaagctcctccaatg
gacaaactcagaggaatggtatttggagcaccaatgccaaaactttactctactatctct
gcacagatagatcttcttcagcaataccgtgcagcagtgattaaatttgataatgtgaat
aaggacctggatttacatttgcagtcactgaacactccagaaatgcaaaagagaaaacag
gaacttgctgaacaagagaaaagcctcaagctagtaaaacaaaaattgggtatgactcct
gctttatcagataaaggtgctgaatcgttacttcagcctataatactagatatatctgac
acccccattccttccaaaagaatgagaagagacacagtgaaaaaattgtacagctcagaa
gaatggatttcctcttctgcaaagcagcagcaacagcaagagctgcaagtggccccttca
gaacttaatggaactccacggaaaagaaaggcatag
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integrated database retrieval system
