Agelaius tricolor (tricolored blackbird): 139588176
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Entry
139588176 CDS
T10815
Symbol
APAF1
Name
(RefSeq) apoptotic protease-activating factor 1 isoform X1
KO
K02084
apoptotic protease-activating factor
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc04115
p53 signaling pathway
atrc04210
Apoptosis
atrc05164
Influenza A
atrc05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
139588176 (APAF1)
04115 p53 signaling pathway
139588176 (APAF1)
09160 Human Diseases
09172 Infectious disease: viral
05164 Influenza A
139588176 (APAF1)
05168 Herpes simplex virus 1 infection
139588176 (APAF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
APAF1_C
Beta-prop_WDR36-Utp21_2nd
EIF3I
WD40_Gbeta
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
WHD_APAF1
WD40_MABP1-WDR62_2nd
NB-ARC
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
Beta-prop_Aladin
CARD
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_RIG_2nd
Beta-prop_WDR41
Beta-prop_TEP1_C
eIF2A
Beta-prop_Vps41
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_IFT140_1st
Beta-prop_NWD2_C
PEP5_VPS11_N
WD40_RFWD3
CARD_2
Beta-prop_SCAP
Beta-prop_VPS8
WD40_like
Tricorn_2nd
Beta-prop_ACSF4
Ge1_WD40
Beta-prop_NUP159_NUP214
Beta-prop_DCAF4
Beta-prop_RSE1_2nd
Beta-prop_Nup120_160
Beta-prop_WDR11_2nd
Beta-prop_DCAF12
WDR54
AAA_16
WHD_Dark
RAB3GAP2_N
AAA_22
DUF2415
nSTAND6
Motif
Other DBs
NCBI-GeneID:
139588176
NCBI-ProteinID:
XP_071279322
LinkDB
All DBs
Position
Unknown
AA seq
1249 aa
AA seq
DB search
MDVKSRNYLLMNRQALENDIKTSYIMDHMISDEVLTLQEEERVKQQNTRQERAAMLINII
LTKDNNSYRSFYNALLHEGYRDLAALLQDGIPAVSSGNRKSSMDGMTSCVKTILCEGGVP
QRPVVFVTRPKLVDAIKKKLYCLGSDPGWVTVYGMAGCGKTVLTAEALRDPQLLEGYFPG
GVYWISVGKQDKAGLLIKLQNLCSRLEHDSTLSQRPPLNIEEAKDRLRLLMLHKYPRSLL
VLDDIWDSWVLKAFDNQCQVLITSRDRSVTDAVAGNKYEVHVESGLAHEKGLEILSLFVN
MKISELPEQANSLVRECKGSPLVISLIGALLRDFPSRWEYYLRQLQNKQFRRIRKSSSYD
YEALDEAMSISVEQLDDNYKDYYKDLSILPKDVKVPTKVLCILWDMETEEVEDILQEFVN
KSLLFCDRNGKSFHYYLHDLQLDFLTEKNRNQLQELHKNIVNQYKKYYKLNTPVLSQEDC
MYWYNFLAYHMAGAKMQQELCDLMFSLDWIKAKTELVGPAHLIHEYVEYSSVLDQKDSTV
RENFQEFLSLNGHLLGRQPFPDIIQLGLCQPETSEVYQQAKLHAQRETGAFYLEWVNKKS
LKNLYRMVVRPHRDAVYHACFSKDRQRIASCGADKTLQVFKAESGERLLEINAHDDEILC
CAFSADGEFVATCSSDKKVKVWNSRTGQCRCVYEEHSEQVNCCQFNNKSGQYLLATCSND
TFIKIWDLNGKYCRNTMIGHENSVNHCRFSPNDEYVASCSTDGTVKLWEARSGNELKSLE
IKDYFKNADEQPDDVEVLVKCCSWSRNGNMILVVAKNKLLLFDIHTCGLLTQVIVSHHST
IQYCDFCPGDELVAVALSHCSVELWNIKSLSKVAYCRGHMSWVHCVTFSPDGSLFLTSSD
DQTIRIWETKKVCKSSDAVLKSELDVVFHDGEVMILAIYNQKNLQLINGNTDKVIMQTAA
QESPISCCCLSEDLKFAAFGQESGTIKVLQLSDGKILKSWEAYRTSVQHCQFTPDCQTLI
SSAHDPVIQVWNWQLSECVFLRGHKEAIKDFRLLENSKILSWSFDGTVKVWNITTGNPEK
DFACHGGAVLSCAVSPDGSKFSSTSADKTAKIWSFESSSVLHELKDHEACVRCCTFSPNN
KLLATGDDKGEIRIWDVLTGALLHFCSPVTVDEGEPTHGGWVTDLSFSPDSKMLVSSGGY
LKWWNVTTGESLQTFYTNGTNLKSIHVSPNFKVYVTVDNLGILYVLQRF
NT seq
3750 nt
NT seq
+upstream
nt +downstream
nt
atggatgtcaagagtagaaactatttgcttatgaatcgtcaagcactggaaaatgacatc
aagacttcttatattatggatcatatgatttctgatgaagtactgacattacaggaagag
gagagagtgaagcaacagaatacacggcaggagcgagcagctatgctaataaacattatt
cttacaaaagataataattcatataggtccttttataatgcactgctccatgaagggtac
agagatctcgctgcacttcttcaggatggcatccctgccgtctcgtctggtaacagaaag
agttcaatggatggaatgacttcctgtgtgaagaccattctctgcgaagggggcgtacca
cagagaccagttgtgtttgtcactcgaccaaaactggtagatgctattaaaaagaaactg
tactgcttgggaagtgacccaggttgggtcacagtttatggaatggcaggctgtgggaag
actgttttaacagcagaagctttaagggatcctcagctcttggaaggttactttccagga
ggagtttactggatctctgttgggaagcaggacaaagcagggctgctgataaaacttcag
aatctctgcagtagattggaacatgactccactctttcacaaaggccaccactgaacatt
gaggaggctaaagatcgtcttcgtttgctgatgttgcacaaataccccaggtctcttttg
gtcctggatgacatttgggattcctgggtgttaaaagcattcgataatcaatgtcaggta
ctgatcacgagcagggacaggagtgtaacagatgctgtggctggcaataaatacgaggtt
catgtggaaagtggactagcacatgagaaaggactggagattttatccctatttgtgaat
atgaaaatatcagaacttccagaacaagctaactctcttgtaagagaatgcaaaggttct
cctctcgtgatatccttgataggtgcattactccgagacttcccgagccgctgggagtac
tatctcaggcagctgcagaataagcagtttagaagaataagaaaatcttcctcctatgat
tatgaagcccttgatgaagcaatgtccataagtgttgagcagctggatgacaattacaaa
gactactataaagacctctctatcctcccaaaagatgttaaagtacctactaaggttctc
tgtattctttgggatatggaaactgaagaagttgaagatatactacaggagtttgttaac
aaatcactgttgttctgtgatcgtaatgggaagtcattccattattatttgcatgatctt
cagcttgactttctcacagagaagaaccgcaaccagcttcaggagctacataaaaacatt
gtaaatcagtacaagaaatactacaagcttaatacacctgttctgtctcaagaggattgc
atgtactggtataactttctagcatatcacatggcaggtgccaaaatgcagcaggagctc
tgtgatcttatgttttctttagattggattaaagctaaaacagaattggtggggcctgct
cacctgattcatgaatatgttgaatatagttcagtcctggatcaaaaggatagcacagtg
cgtgagaatttccaggagtttctgtccttaaatgggcaccttcttggccggcagcccttt
cctgacatcatccagctgggtctttgccagccagagacatcagaggtgtatcaacaggcc
aagctacatgctcaaagggaaacaggagcattttatctggagtgggtaaataaaaaatcc
ttgaaaaatctctaccgtatggttgttcgcccgcacagagatgcagtttaccatgcctgc
ttttctaaggacagacaaagaatagcatcatgtggagctgataaaactcttcaggtgttt
aaagcagaaagtggagagagactcctggagataaatgcccacgatgatgaaatactctgt
tgcgctttttctgcagatggtgaatttgtagcaacttgttcaagtgataaaaaagtcaag
gtctggaattcaagaacaggccagtgtaggtgtgtgtatgaagagcactccgagcaggtc
aattgctgccagttcaataacaaaagtggtcagtaccttctggccacctgctcaaatgac
actttcatcaaaatttgggatttgaatggaaaatactgtagaaatacgatgataggtcat
gaaaattctgtcaatcactgcagattttcaccaaatgatgagtatgttgctagctgctcg
acagatggaacagtaaagctttgggaagcacgctcaggaaatgaactgaaaagccttgag
ataaaagattactttaaaaatgcagatgaacaaccagatgatgtagaggttttagtaaaa
tgttgctcttggtccagaaatggtaacatgattttggtggtagccaaaaataagcttttg
ctttttgacatccacacctgtggtttgttaactcaagtcattgtcagccatcacagcaca
atccaatactgtgacttctgtcctggggatgagttggtagcagttgctttgtctcactgc
tctgttgagttatggaatattaagtctttatcaaaagtggcatattgcagaggacacatg
agctgggttcactgtgtgacattttcaccagatggatctttatttctgacttcatctgat
gaccagacaatacgtatctgggaaacaaagaaggtgtgcaagtcttctgatgctgtgctg
aagagtgaactagatgttgtgtttcacgatggtgaagtgatgattttagccatctacaac
cagaagaatttacaacttatcaatggaaatacagacaaagttattatgcagacagcagct
caagaatcccccatttcctgctgttgcttaagtgaagatcttaaatttgcagcttttggg
caggagagtggaacaataaaggtactacagttgtcagatgggaagattctgaagtcctgg
gaggcctacaggacatctgtgcagcactgtcagtttacacccgactgtcagactctcatc
tcaagtgctcatgatccagttatacaggtatggaattggcaattgagtgaatgtgtgttt
ctaagagggcacaaggaagcaatcaaggattttagacttctggaaaattcaaaaattctc
tcttggtcattcgatggaactgttaaggtttggaatatcactactggaaacccagaaaaa
gattttgcttgtcatggaggcgctgttctttcctgtgctgtttcacctgatggtagtaaa
ttttcatctacttctgctgacaaaactgcaaagatatggagctttgaaagttcatctgtt
cttcatgaactgaaggaccacgaagcctgtgtgcggtgctgcactttctctcctaataac
aaactgctggccactggagatgacaaaggagaaataaggatttgggatgttttaacaggt
gcattacttcatttctgctccccagttactgtagatgaaggagagccaacacatgggggt
tgggtaacagacctctccttttctcctgacagtaaaatgcttgtgtcatctggaggctat
cttaagtggtggaatgtaactacgggagaatctttacaaaccttctacacaaatggaaca
aacctcaagtcaatacatgtgtcccctaatttcaaagtatatgtgactgttgataatctt
ggcattctttatgtactacagaggttctga
DBGET
integrated database retrieval system
