Agelaius tricolor (tricolored blackbird): 139590034
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Entry
139590034 CDS
T10815
Symbol
THBS1
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc04115
p53 signaling pathway
atrc04145
Phagosome
atrc04148
Efferocytosis
atrc04350
TGF-beta signaling pathway
atrc04510
Focal adhesion
atrc04512
ECM-receptor interaction
atrc04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
139590034 (THBS1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
139590034 (THBS1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
139590034 (THBS1)
04148 Efferocytosis
139590034 (THBS1)
09143 Cell growth and death
04115 p53 signaling pathway
139590034 (THBS1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
139590034 (THBS1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
139590034 (THBS1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
atrc04131
]
139590034 (THBS1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
atrc00536
]
139590034 (THBS1)
Membrane trafficking [BR:
atrc04131
]
Endocytosis
Phagocytosis
Opsonins
139590034 (THBS1)
Glycosaminoglycan binding proteins [BR:
atrc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
139590034 (THBS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
cEGF
TSP1_ADAMTS
TSP1_CCN
Laminin_G_3
EGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
139590034
NCBI-ProteinID:
XP_071283148
LinkDB
All DBs
Position
Unknown
AA seq
1177 aa
AA seq
DB search
MGPATALCLLLLVLGGSETKRTAESRNDDNSVFDLFELIGFMKKGAGRRAPGVYLVKGPE
SSSPAYRIEDASRIPAVPDSKFQDLLDAIHAEKGFILLATLRQAKKSRGTLLSVEQKDGS
GHVFSLVSNGKAGSLDLSLSADGKQQLVSVEDVLLATGHWKNITLFVQEDRAQLYVGCEK
MENAELDMPIQNIFTRDLASSARLRIAKGGVNDNFQGLLQNVRFVFGTTLETILRNKGCS
SSTSAIITLDNPINGSSPAIRTNYIGHKTKDIQAVCGFSCDELTNMFVELQGLRSMVTTL
QDRVRKVTEENEIIAKVVQITPGACIHNGVLHKNKEEWTIDSCTECTCQNSATICRKVSC
PLMPCSNATVPDGECCPRCWPSDYADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRC
EGSSVQTRTCHLQECDKRFKQDGGWSHWSPWSSCSVTCGTGIITRIRLCNSPVPQLNGKP
CEGEARENKACQKDPCPINGNWGPWSPWDACTVTCGGGLQKRSRLCNNPEPQYGGKTCVG
EARGTQVCNKQDCPIDGCLSNPCFAGATCTSAPDGSWKCGACPAGYHGDGIHCQDIDECK
EVPDACFVFNGVHRCENTEPGYNCLPCPPRFTGTQPFGRSVEDAMSNKQVCKPRNPCTDG
THDCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHC
KKDNCPNLPNSGQEDYDKDGIGDACDSDDDDDGIPDDRDNCPFIYNPQQYDYDRDDVGDR
CDNCPYNHNPDQTDTDNNGEGDACAIDIDGDGVLNERDNCQYVYNVDQRDTDLDGVGDQC
DNCPLEHNPDQEDTDSDLIGDQCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDA
CDHDDDNDGIPDDKDNCRLVANPDQADSDGDGRGDACKDDFDQDSVPDIDDICPENVEIS
ETDFRKFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFF
INTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPG
EHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKIMA
DSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggggccagcgactgctctctgcctccttctcctcgtgctcggcggatcagagaccaag
cgcactgcagagtccaggaatgatgataacagcgtcttcgatctctttgaactcattggc
ttcatgaagaagggagctgggcgccgggcccccggggtgtacctggtgaagggaccagaa
tcctccagccctgcttaccgcattgaagatgccagtcgcatccctgctgtccctgactcg
aagttccaagacttattagatgccatccatgctgagaagggtttcattctcctggccact
ctccggcaagccaagaagagcagaggcacactgctctctgtggaacagaaagatggctct
ggtcatgtcttcagtctagtatcaaatgggaaggcaggctccctggacctgagcctttct
gctgatggcaagcagcagttagtgtcagtagaggatgtcttgctagctacaggacactgg
aagaatatcaccctgtttgtgcaggaggaccgagctcagctctatgtggggtgtgagaaa
atggagaacgctgagctggacatgcccatccagaacatctttactagggacctcgccagc
agtgctagactgcgtattgccaaaggcggagtcaatgacaacttccagggtctgctgcag
aatgtgcggtttgtgtttggaacaactctggaaactatcctgcggaacaaaggctgctcc
agctccactagtgcaatcattactttggacaaccccatcaatggttccagcccagctatc
cgcactaattacattggccataaaacaaaggacatccaagcagtctgtggattttcctgt
gatgaactaacaaatatgtttgtggaactgcaagggctacggtccatggttacaacactt
caagacagagtccgaaaagtgactgaagaaaatgaaatcattgccaaagtagtccagatc
actcctggagcgtgtattcataatggagtcttgcacaaaaataaagaggagtggactatt
gacagctgcactgaatgtacttgccagaactctgccactatatgccggaaagtgtcctgt
cctctcatgccttgttccaatgccaccgtgcctgatggggagtgctgccctcggtgctgg
cctagcgactacgcagatgatggatggtctccttggtctgaatggacctcgtgttctgtg
acctgtggtaatgggattcagcagagaggccgatcctgtgacagtctcaacaaccgctgt
gaaggctcctctgtacagactaggacttgccaccttcaggagtgtgataagagatttaaa
caggatggtggctggagtcactggtcgccatggtcatcatgttctgtcacttgtggcacg
ggcatcattactagaattcgtctttgcaactctccagtaccacagctgaatggcaaaccc
tgtgagggtgaagcaagagaaaacaaagcctgccagaaagatccttgcccaattaatggc
aactggggaccatggtctccatgggatgcttgcacagtgacatgtggaggaggacttcag
aagcgaagccgtctctgcaataatcctgagcctcagtatggtgggaagacttgtgtaggt
gaagctagagggactcaggtctgcaacaaacaggactgtccaattgatgggtgtctgtct
aatccctgctttgcaggggctacgtgcaccagtgcccctgatggttcctggaaatgtggg
gcctgtcctgctggctaccatggtgatggtattcactgccaagacattgatgagtgcaaa
gaggttcctgatgcctgctttgtgttcaacggagtgcacaggtgtgagaatactgaacct
gggtacaactgtctgccttgcccaccacgtttcactggaacacagccatttggtcgcagt
gttgaggatgccatgagtaacaaacaggtttgcaagccacgtaatccatgcacagatgga
acacatgactgcaacaagaatgccaaatgcaattaccttggccactttagtgaccccatg
taccgctgtgagtgtaaaccaggctatgctggcaatggcatcatctgtggagaagatacg
gacttggatggatggccaaatgagaacctggtttgtgttgccaatgctacttaccactgt
aaaaaagataactgccctaatctgcctaactcagggcaggaagactatgataaggatggg
attggtgatgcctgtgacagtgatgatgatgatgatggcattcctgatgaccgggacaac
tgtccattcatctataacccacagcagtatgactatgacagggatgatgttggtgaccgc
tgtgacaactgtccctacaatcacaaccctgatcaaactgacactgacaacaatggtgaa
ggagatgcatgtgcaatagatattgatggagatggggtgcttaatgaaagggacaactgc
cagtatgtctacaatgtagaccagagggatacagacttggatggtgttggagatcagtgt
gataactgtccactggaacacaaccctgaccaggaagacactgattctgacctcataggt
gatcagtgtgacaacaaccaggacatagatgaagatggtcatcaaaataaccttgataat
tgcccctatgtgcccaatgccaatcaagctgaccatgacaaggatggaaaaggtgatgcc
tgtgaccatgatgatgacaatgatggtatccctgatgacaaagacaactgcagactggtt
gccaacccagaccaagctgattctgatggtgatggacgtggagatgcttgcaaagatgac
tttgaccaagatagtgtgccagacattgatgatatctgccctgaaaatgtggaaattagt
gagactgacttccgaaaattccagatgattcccctggatcccaaaggaacatcccaaaat
gatccaaactgggttgttcgtcaccagggtaaagaactggttcagacagtcaactgtgac
cctggccttgcagtcggttttgatgaattcaatgctgtggacttcagtggcaccttcttt
atcaatacagaaagggatgatgattatgctggctttgtatttggctaccaatctagcagt
cgtttctatgttgtcatgtggaagcagatcacccagtcttactgggattccacaccaacc
aaagctcaaggctattcaggtctctccatcaaagttgtgaattccaccactggtccagga
gaacaccttcgtaatgctctgtggcacacaggaaacactcctggccaggtgagaactttg
tggcatgatcctcgtcacataggctggaaagacttcactgcatacagatggcgacttagc
catagaccaaagactggctacatcagggttgtaatgtatgaagggaagaaaatcatggca
gactcaggaccaatctacgataaaacctatgctggtggtcggctaggattatttgtcttc
tctcaagaaatggtgttcttctcagaccttaaatatgaatgcagagattcgtaa
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integrated database retrieval system
