Agelaius tricolor (tricolored blackbird): 139590550
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Entry
139590550 CDS
T10815
Symbol
KDM2A
Name
(RefSeq) lysine-specific demethylase 2A isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
139590550 (KDM2A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
atrc03000
]
139590550 (KDM2A)
04121 Ubiquitin system [BR:
atrc04121
]
139590550 (KDM2A)
03036 Chromosome and associated proteins [BR:
atrc03036
]
139590550 (KDM2A)
Enzymes [BR:
atrc01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
139590550 (KDM2A)
Transcription factors [BR:
atrc03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
139590550 (KDM2A)
Ubiquitin system [BR:
atrc04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
139590550 (KDM2A)
Chromosome and associated proteins [BR:
atrc03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
139590550 (KDM2A)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
139590550 (KDM2A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
JmjC
Cupin_8
Ribosomal_60s
LRR_4
Motif
Other DBs
NCBI-GeneID:
139590550
NCBI-ProteinID:
XP_071284356
LinkDB
All DBs
Position
Unknown
AA seq
1207 aa
AA seq
DB search
MAAAAPVRGQRRRRDLEEEDDDSSPGVSFSLSSEESEMEPEEERIRYSQRLRGTMRRRYE
DDGISDDEIEGKRTFDLEEKLSTNKFNSTFVVFMEGKDFTVEYIQRGGLRDPLIFRSSDG
LGIKMPDPDFSVNDVRLCVGSRRIVDVMDVNTQRDIEMSMAQWARYYETPEEEREKLYNV
ISLEFSHTKLENLVQRPATVDLIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMS
VKGCYTDFHVDFGGTSVWYHIHRGGKIFWLIPPTPQNLELYENWLLSGKQGDIFLGDRVS
ECQRIELKQGYTFVIPSGWIHAVYTPMDTLVFGGNFLHSFNIPMQLRIYSIEDRTRVPNK
FRYPFYYEMCWYVLERYVYCITSRSHLTKDFQKESLSMDMELSSSDSVNMEEEEEEDDDE
DAAGKESRRPATRRSILTSPIANGATVDYDELGKSCRSSLPGLKKTPSMDSSDSSRGSQN
GQAWEPSGGSPRKSRKVHLTQFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKL
LLEEYANSDPKLALTGVPIVQWPKRDKLKLQARLRVRLPTIPITKPHTMKPAPRPTPVRS
TVSPIVSGARRRRVRCRKCKACMQGECGMCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLP
HSVTCALCGEVDQNEDSQDFEKKLMECCVCNEIVHPGCLQMDGEGLLNDELPNCWECPKC
YQGDDAEKGQKRKVEESDDDTAQAKVLRPLRSCEEPLTPPPNSPTPMLQLIHDPASPRGV
VTRSSPGAGPSEHHSASRDERFKRRQLLRLQATERTMVREKENNPSGKKELSEVEKAKLH
GSYLTVTLQRPTKDVHGTSIVPKLQAITASSANLQHSPRVVVRHAPARMPLRSGGDEEAA
AEEEEEEEEEEDENAEEGGAARLNGRGGRAQEGEESCVQREVWMSVFRYLTRRELCECMR
VCKTWYKWCCDKRLWTKIDLSRCKSITPQALSGIIKRQPVSLDLSWTNISKKQLTWLVNR
LPGLKDLILAGCSWSAVCALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPTDKPSQDNR
SKLRNMIDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCNHLTDQSANLLTAVGSSTRNS
LTELNMAGCNKLTDQALLYLRRISNVTLIDLRGCKQITRKACEHFISDLSINSLYCLSDE
KLIQKIS
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggctcctgtaagaggacaaaggcgcaggagagacctggaggaagaggac
gacgacagcagtcctggcgtgtccttctcgctctcctccgaagagtcggagatggagccc
gaggaagaacggatccgatacagccagagactgcgtggcacgatgaggcggcgttacgag
gacgacggcatctccgatgatgagattgaggggaagaggacgttcgacctcgaggaaaag
ctgtccaccaacaagttcaactccactttcgtggtcttcatggaaggcaaagacttcaca
gttgagtacatccagcggggtggcctgagggacccgctcatcttcaggagctcggacggc
ctggggataaagatgccggatccggatttcagcgtgaacgatgtgcggctgtgtgtgggg
agcagacggatagtggatgtgatggatgtgaacacgcagcgggacatcgagatgtccatg
gcgcagtgggcgcgctactacgaaacgccagaggaggagcgggagaaactctacaacgtc
atcagcctggagttcagccacaccaaactggagaacctggtgcagagacctgctacggtg
gatttgattgactgggttgataacatgtggcccaggcacctgaaggaaagtcagacagag
tctaccaatgccatcctggagatgcagtatccaaaggtgcagaaatactgtttgatgagt
gtcaagggctgctacacagatttccacgtggactttggtggcacttctgtgtggtaccac
atccaccgagggggaaagatcttctggctgatccctcccacgccccagaacctggagctc
tatgaaaactggcttctctcagggaagcagggagacattttccttggggacagagtgtca
gagtgccagcgcatcgagctcaagcagggctacacatttgtcatcccctcaggttggatc
catgctgtgtacactcccatggacacgctggtttttggcggcaacttcttacacagcttc
aacatccctatgcagctccggatctacagcatcgaggaccgcacccgggtcccaaataaa
tttcgttatcccttctattacgagatgtgttggtacgtgctggagcgttacgtgtactgc
atcaccagccgctcccacctgaccaaggacttccagaaggagtccctcagcatggatatg
gagctgagctcctcggactcggtgaacatggaagaggaggaggaggaggatgatgatgag
gatgcagcagggaaggaatcgcggcgccccgcgaccaggaggtccattctcaccagcccc
atcgccaacggtgccaccgtggactatgacgaactgggcaagagctgccggagcagcctg
ccgggtctcaagaagaccccatccatggactcttccgactccagccggggctctcagaac
ggccaggcctgggagccgagcgggggcagcccccgcaagagcaggaaggtgcacctgacc
cagtttgagctggaggggctgcgctgcctcgtggacaagctggagtcgctccctctgcac
aagaagtgcgttcccaccggcattgaggacgaggacgccctcatcgctgacgtcaagctg
ctgttggaagaatacgcaaacagcgaccccaaactggcacttacaggcgtccccatcgtc
cagtggcccaagagagataagctaaagctccaggcccggctgcgggtgcgcctgcccacc
atccccatcaccaagccgcacaccatgaagccagcaccgcgccccactcccgtcaggtcc
acggtgtctcccatcgtgtcgggcgcccggcggaggcgggtgcggtgccggaaatgcaag
gcctgcatgcagggcgagtgtggcatgtgccactactgcagggacatgaagaagttcggc
gggcccggccgcatgaagcagtcctgtgtcctccggcagtgcttggcgcccaggttgcct
cactcggtcacgtgtgcactttgcggggaggtggatcagaacgaggactcgcaggacttt
gagaagaagctcatggagtgctgtgtgtgcaacgagatcgttcaccctggctgtctgcag
atggatggggaagggctgctcaatgatgagctccccaactgctgggagtgccccaagtgc
taccagggtgacgacgcagagaagggccagaagcggaaggtggaggagagcgatgacgac
acggcacaagccaaggtgctgcggcccctgcggagctgcgaggagcccctgacccccccg
cccaactcgcccaccccgatgctgcagctgatccacgaccccgcgtccccccgcggggtg
gtgacacgctcgtccccgggcgccgggcccagcgagcaccacagcgccagccgggacgag
cgcttcaagcgccggcagctgctgcggctccaggccacggagagaaccatggtgcgggag
aaggagaacaaccccagcggcaagaaggagctgtcagaggtggagaaggccaagctgcac
ggctcctacctcaccgtgacactccagcgccccaccaaagatgtccacggcacttcgatt
gtccccaagctccaagccatcacggcctcctcggccaacctgcagcactctccgcgcgtg
gtcgtgcgccacgcgcccgccaggatgcccctgcggagcgggggcgacgaggaggcggct
gctgaggaagaggaggaggaagaagaggaggaggatgagaacgcagaggaggggggggcg
gcgcggctgaacgggcgcgggggccgggcgcaggagggtgaggagagctgcgtgcagcgc
gaggtgtggatgtccgtgttccgctacctcacccgcagggagctctgcgagtgcatgcgg
gtgtgcaagacctggtacaagtggtgctgtgacaagagattgtggacaaagatagacttg
agcaggtgcaagtccatcaccccacaggcgctgagcggcatcatcaaaaggcagccggtc
agccttgacctcagctggaccaatatctcaaaaaaacagcttacatggctcgtcaacagg
ctgccaggcctgaaagacctcatcctagcaggctgttcctggtctgcggtctgtgccctc
agtacctccagctgcccccttctcaggaccctcgatcttcggtgggcagtaggaatcaag
gaccctcagatccgggacttactcacgcctccaacagacaaacccagtcaggacaatcgc
agcaaactccgcaacatgatcgacttccggctcgccgggctggacatcacggacgccacg
ctgcgcctgatcatccgccatatgcccctgctctcccgcctcgacctcagccactgcaac
cacctcacggaccagtcggccaacctcctcaccgccgtgggctcctccacacgcaactcc
ctcaccgagctcaacatggcaggctgcaataagctgacggaccaggccttgctgtacctg
cgccgcatctccaacgtcaccctcatcgacctgcggggttgcaaacagatcacccgcaaa
gcctgtgagcacttcatctcggacctgtccatcaacagcctctactgcctgtccgatgag
aagctgatccaaaaaatcagctag
DBGET
integrated database retrieval system
