Agelaius tricolor (tricolored blackbird): 139600051
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Entry
139600051 CDS
T10815
Symbol
SMG6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139600051 (SMG6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atrc03019
]
139600051 (SMG6)
03032 DNA replication proteins [BR:
atrc03032
]
139600051 (SMG6)
Messenger RNA biogenesis [BR:
atrc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
139600051 (SMG6)
mRNA cycle factors
Common to processing body (P body) and stress granule
139600051 (SMG6)
DNA replication proteins [BR:
atrc03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
139600051 (SMG6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
PIN_9
Motif
Other DBs
NCBI-GeneID:
139600051
NCBI-ProteinID:
XP_071304013
LinkDB
All DBs
Position
Unknown
AA seq
1419 aa
AA seq
DB search
MAEGLERVRVSAAELRDMVAAQARAAGGGRENMKEVKEPRHRKDNRRPDQEIYKPGLSRL
RSKLVSPKQEASEKERSRAEEGKEESAGDKDSVGVGAPAMEDCDKSDGPKQNGPSQEKEE
TETKGGLQSQENSSKQPIVDEWCPKAPRRTKKPDQQIYQPGKRLQSAVKEPSLQSASEEI
TGRMEQLKLEGDEETEKSTGKDNNRKIRSSREDREASQAGEAVKASRGDKGRRAERSDRV
RRAGDEVLPGKLGSTKRYSRTDKRRSRYRTCSTSSAGSNNSTDGALLVDGVERRQERARE
RIRPRKQLSVSSTDSLDDDRIDEAEVYVSSRNSDRRRHSEQSRASRSESEWSSNGREVKG
PFRVTFDSRTMNRDIGLADTDKKKSLKASEVSEARSQSREPQGRGRGILFLPANTDLSAS
SVGVPEATHPGPRLLLGGAGSKGPRSRGRGGTARRLWDPNNPDQKPALKSQTAQLHFLDT
DDEVSPTSWGETRQAQPSYYKFQNSDNPYYYPRASGQGPQYPYGGYSLQYPMGPTNGVYP
GAYYPGYPGQAGQYLCGPLPPTPLSPEMEQQMRNMQQQELSKLLREAGNQEQQLSNLLSR
DRISPEGLEKMAQLRVEMLQLYERCILMDIEFSDTQNVDQLLWKNAFYQVIEKFRQLLKD
PQGENAQEIRNKLLLLLDEGSSFFDGLLQKLQVSYQFKLEDYMDGMAIRSKPLRKMVKYA
LISAQRCMICQGDICRYREQANDTANYGKARSWYLKAQQIAPKNGRPYNQLALLAIYTRR
KLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKSEQMEQRKHQVLDVSPSRRGKGKKS
TLRQVGDDATRLEIWIHPSHPRSCQGHESSRDSEQDNGLGNLSPSDLNKRFILSFLHAHG
KLFTRIGMETFPAVAEEVLREFQVLLQHSPPPIGSTRMLQLVAINMFAVYNSQPKECISE
DCRSVIQEQATALGLSMFALLVRRCTSLLRECVPVQPQEMEQEDEEDDIKVSALPQDLKE
LLPSVKVWSDWMLGHPDTWNPPPTALELPKQVSVDVWATLADFCNILTTVNQSEVPLYKD
PDDDLALLSLEEDRLLSGFVPLLVAPQEPCYVERTSDKVIAADCKRVTVLKYFLEALCGQ
EEPLLAFKGGKYVSVAPVPDAMGKEMGSQEGKQLEDQKEDDVRIEAFEDDSETEGSGGEM
DIKELRAKKQALARKVAEQQRRQDKIQAVLKDQSQMRQMELEIRPVFLVPDTNGFIDHLG
SLVTLLDCRKFILVVPLIVINELDGLAKGPEMEHRAAGYARQVQERARKSIEFLEERFES
RDNCLRALTSRGNELESISFRSEDTTGQQGNNDDLILSCCLHYCNDKAKDFMPSNKDDPI
RLLREVVLLTDDRNLRVKALTRNVPVRDIPTFLKWAQEG
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atggcggaggggctggagcgcgtccgcgtctcggccgccgagctgcgggacatggtggcg
gcgcaggcccgcgcggccggcggcgggcgagaaaacatgaaggaggtgaaggagccgagg
caccgcaaagataacaggcgcccagaccaggagatttacaagcctggcctctccagactg
aggagcaaacttgtgtcaccaaagcaagaggcctcggagaaggaaaggagcagagctgag
gagggcaaggaggagagtgctggggacaaggactctgtgggagtgggagctccagctatg
gaggattgtgacaaaagtgatggccccaagcagaacggtccttcacaggaaaaggaagaa
acagagaccaaaggtggcctgcaaagccaggaaaactcatccaagcagcccattgtggat
gaatggtgcccaaaggcccccaggagaaccaagaagccagaccaacagatctaccagcct
gggaaacgcctgcagtctgctgttaaagaaccctccctgcagtcagccagcgaggaaatc
actgggaggatggagcagctgaaacttgagggagacgaagagactgagaaaagcactgga
aaagacaacaacaggaaaatcagatccagcagggaggatagagaggcgagccaggcaggg
gaagcagtgaaagcctccaggggggataaagggaggcgagcagagcggagtgacagggtg
aggagggcgggggatgaggtgctgccggggaagctgggctccaccaagcgctactcgcgc
acggacaagcggcgcagccggtaccgcacctgcagcaccagctcagccggcagcaacaac
agcacggacggagccctgctcgtggatggggtggagaggaggcaggagcgtgccagggag
aggatacgtcccaggaagcagctctctgtgtcctccacagattccctggacgatgacagg
attgatgaggctgaggtgtacgtctccagcaggaattcagacaggaggaggcattcggag
cagagccgagcttctaggagtgagagtgaatggagcagcaatggcagggaagtcaaggga
ccctttcgagtgacatttgacagcaggaccatgaacagggacatcggcctggcagataca
gataaaaaaaagtccctgaaggcctctgaggtttcggaggcaaggagccagagcagggag
ccccaggggaggggccgtgggattctgttcctgcctgccaacacggacctctctgccagc
tcagtgggtgtccctgaagccactcaccctggccccaggctcctgctgggcggggctggc
agcaaaggcccccggagccggggccgaggtggcactgcccgccgcctgtgggacccaaac
aacccggaccaaaaacccgccctgaagagccagactgctcagcttcacttcctagacacg
gatgatgaagtgagccccacctcctggggggaaacccgccaggcccagccctcctattat
aaattccaaaactctgacaacccctattattaccctcgtgcctccgggcaaggcccccag
tatccctatgggggatattccctgcagtatcctatgggtccaaccaacggggtgtaccca
ggagcctattaccctgggtaccctggccaggcagggcagtacctgtgtggcccactccct
cctactcctctgagccctgagatggagcagcagatgaggaacatgcagcagcaggagctc
agcaaactcctgcgtgaggctgggaaccaggagcagcagctcagcaacctcctgtccaga
gaccgcatcagcccggaggggctggagaagatggcccagctgagggtggagatgctgcag
ctctatgaacggtgcatcctcatggatattgagttctctgacacccagaacgtggaccag
ttgctgtggaaaaatgctttttaccaggtgattgagaaattccggcagctcctcaaggac
ccccagggggaaaacgcccaagaaattcggaacaaactgctcttgcttctagatgagggc
tcttctttttttgatggcctcctccagaagctgcaggtctcctaccagttcaagctggag
gactacatggatgggatggccatccgcagtaaacctctcaggaaaatggtgaagtacgcc
ctgatcagtgcccagaggtgcatgatctgccagggggacatttgccgctacagggaacag
gccaacgacacggcgaactacggcaaggcccgcagctggtacttgaaggctcagcaaatt
gctcccaaaaacggccgcccgtacaaccagctggcacttctggccatctacacgaggagg
aagctggatgctgtgtactactacatgcgcagcctggctgccagcaaccccatcctcact
gccaaggagagcctgatgagtctgtttgaggagacaaaacgcaagtctgagcagatggag
cagaggaaacatcaggtgctggatgtgagccccagccgccggggcaagggcaagaaatcc
accctgagacaagtgggagacgatgccaccaggctggagatctggatccatccctcccac
ccccgctcgtgccagggccacgagtccagccgggattctgagcaggacaacgggcttggg
aacctcagccccagcgacctgaacaaaaggttcatcctcagttttctccatgcccatggg
aagctgtttaccaggattgggatggagactttccctgccgtggccgaggaggtcctgagg
gagttccaggtgctgctgcagcacagcccccctcccatcggaagcacccgcatgctgcag
ctcgtggccatcaacatgtttgcagtgtacaactcccagcccaaagagtgcatctctgag
gattgccgctccgtcatccaggaacaggccacggccctggggctctccatgtttgccctc
ctggtgaggaggtgcaccagcctgctgagggaatgtgtgccagttcagccacaagagatg
gagcaggaggatgaggaggacgacatcaaggtctctgccttgccccaggacctgaaggag
ctgctccccagtgtgaaggtttggtcggactggatgcttggccacccggacacctggaat
cctcctccaacggctcttgagctccccaaacaggtctcagtagatgtgtgggcgacgctg
gctgacttctgtaacatactgaccacagtgaatcagtcggaggtgcccttgtacaaggac
ccagatgacgaccttgccctgcttagcctggaagaggatcggctgctctcgggcttcgtt
cccctgctggtcgccccccaggagccctgctacgtggagaggacctcggacaaggttatt
gcagccgactgcaagagggtcacagttctgaagtatttcctggaagccctttgtggacaa
gaagagcctttgctggcattcaagggtggaaaatatgtgtcagtggcacccgtcccagac
gccatgggaaaggaaatgggaagccaagagggaaaacaactggaagatcagaaggaggat
gatgtgaggattgaggcctttgaagatgactctgagactgaaggcagtggaggagagatg
gacatcaaggagctcagagccaaaaagcaagcgctggccaggaaagtggcagagcagcag
cgccgccaagacaagattcaggccgtgctgaaagaccagagccaaatgaggcagatggag
ctggagatcagacctgtctttctggtcccagacaccaatggtttcatcgaccacctgggc
agtttggtcacgctgctggactgcaggaagttcatcctggtggtgcccctgatcgtgata
aacgagctggatggcctggccaagggcccagagatggagcaccgggctgcaggctatgcc
cgccaagtgcaggagagagccaggaagtccatcgagttcctggaggagcgatttgagagc
agggacaactgtttgagggctctgaccagccgaggcaacgagctggagtccatctccttc
cgcagtgaggacaccactggccagcagggaaacaatgatgacctgattctgtcctgctgc
ctccactattgcaatgacaaggccaaggatttcatgccctccaacaaagacgatcccatc
cgtttgctcagggaagtggttttgctgacggacgaccggaacctgcgagtcaaagcgctg
acccgcaacgtgccggtgcgggacatccccaccttcctcaagtgggctcaggagggctga
DBGET
integrated database retrieval system
