Agelaius tricolor (tricolored blackbird): 139601575
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Entry
139601575 CDS
T10815
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
atrc Agelaius tricolor (tricolored blackbird)
Pathway
atrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139601575 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
atrc03041
]
139601575 (EFTUD2)
Spliceosome [BR:
atrc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139601575 (EFTUD2)
Complex C
U5 SnRNP specific factors
139601575 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Septin
FANCL_d3
Motif
Other DBs
NCBI-GeneID:
139601575
NCBI-ProteinID:
XP_071306804
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDDDDDELGREAKDLDELEDDDDDDDMGEHDEEHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFSLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDQDLCYTDILFTEQERGVG
IKSTPVTIVLPDTKGKSFLFNIIDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISMYSTDENLVL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTYGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTTLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKTKIEHTYTGGVDSDLGEAMSECDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATVTEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKSLLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVIAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacaccgacctgtacgatgagtttggcaactacatcgggcccgagctggactcggac
gatgacgatgacgagctgggccgggaggccaaagacctggacgagctggaggatgatgat
gatgatgatgacatgggggagcacgacgaggagcaccctgggatggaggtggtgctgcat
gaggacaagaagtactaccccacagcagaggaggtctatgggcctgaggtggagaccatt
gtgcaggaggaggacacacagccactcactgagcccattatcaaacctgtgaaaaccaag
aagttctccctgatggagcagacactgccagtcactgtctacgagatggatttcctggca
gatctgatggacaactcggagctgatccggaatgtgactctgtgtgggcacctgcaccac
ggcaagacttgttttgttgactgcctgatagagcagacgcaccccgaaatccggaaacgc
gacgatcaggacctctgctacactgatatattgttcacagagcaggagaggggggtgggg
atcaagagcaccccagtgacaattgttctgccagacaccaaaggaaaatctttcctcttc
aacatcattgacactccaggtcatgtgaatttttctgacgaggtgacggccggccttcgc
atctcggacggcgtcgtgctcttcattgacgcggccgagggggtgatgctgaacacagag
aggctgatcaagcatgctgtgcaggagaggctggcagtgactgtgtgcatcaacaagatt
gacagactcatcctggagctcaaactgccccccacagatgcttactacaagctcagacac
attgtggatgaagttaatggtctgatcagcatgtattccaccgatgagaaccttgtgctg
tctccccttctggggaacgtgtgcttctccagctctcagtacagcatctgcttcacactg
gggtcttttgcaaagatttatgcagacacatatggagacatcaattaccaggagtttgcc
aagcggctttggggcgacatctacttcaacccgaagacccgcaaattcaccaagaaggcc
ccgacgagcagctcccagcgcagcttcgtggagttcattctggagcccctgtacaagatc
ttggctcaggtggtgggggatgtggacaccaccctgcccaggactctggatgaacttggc
atccacctgaccaaagaggagttgaaactgaacatccggcccctcctgcggctcgtctgc
aagaagttctttggggagttcacaggctttgtggacatgtgtgtgcagcacattccctcc
ccaaaagtgggggccaagaccaaaattgagcacacctacaccggcggcgtggactccgac
ctgggcgaggccatgagcgagtgtgaccctgatggtcccttgatgtgtcacaccaccaaa
atgtacagcactgatgatggtgtccagttccacgcctttggcagggtgctcagtggcacc
atccatgctgggcagcctgtgaaggtccttggggagaactacaccctggaagatgaggag
gattcccagatctgcaccgttggacgcctctggatctcagttgcaagatatcacattgag
gtgaacagagttcctgctggcaactgggtgctgattgagggcgtggaccagcccatagtg
aagacagcaactgtgacagagcctcggggcaatgaggaggctcagatctttcgtcccctg
aagttcaacaccacatctgttatcaaaatagctgtggagccagtgaacccctcagagctg
cccaaaatgttggatggtcttcgtaaagtcaacaagagctacccctcacttacaaccaag
gtggaagaatctggggaacatgtgatcctgggcacaggagagctgtacctggactgtgtg
atgcacgacctgaggaagatgtactctgagattgacatcaaggtggctgatccagtggtg
acattctgtgagacagtggtggaaacatcctccctgaagtgctttgctgagacacccaac
aagaagaacaagatcacaatgattgctgagcccctggagaagggactggcagaggacatt
gagaacgaagtggtgcagataacatggaacagaaagaagctgggtgaattcttccagacc
aaatacgactgggatttgctggctgcccgttccatctgggcctttgggccagatgccact
ggcccaaacatcctggtagatgacacactgccctcagaggtggacaagtctctgctgggt
tcagtgaaggacagcatcgtgcagggcttccagtgggggaccagggaaggacccctctgt
gatgaattgatccgcaacgtgaagttcaagatcctggatgcagtgattgctcaggagccc
ttgcacaggggtggagggcagatcatccccacagcccgcagggtggtgtactctgccttc
ctcatggccacccctcgtctgatggagccctactactttgtggaggtgcaggctcctgct
gactgtgtgtctgctgtgtacacggtgctggcccggcgcagaggccacgtgacccaggat
gctccaatcccaggctctcccctctacaccatcaaagccttcatcccagccattgattcc
tttggatttgagacagatttgaggacccacacgcagggacaagccttctctctctctgtc
ttccaccactggcagatcgtgcctggggaccccttggacaagagcatcgtcatccggccg
ctggagccacagccagccccacacctggccagggagttcatgatcaagaccaggcgtagg
aagggcctcagtgaggacgtgagcatcagcaagttctttgatgaccccatgttgctggaa
ctggccaagcaggacgtcgttctcaactaccccatgtaa
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