Amaranthus tricolor (tampala): 130797258
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Entry
130797258 CDS
T09367
Name
(RefSeq) 5'-3' exoribonuclease 4
KO
K20553
5'-3' exoribonuclease 4 [EC:3.1.13.-]
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
130797258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130797258
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
130797258
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_5
Motif
Other DBs
NCBI-GeneID:
130797258
NCBI-ProteinID:
XP_057515770
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Position
12:4119056..4129763
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AA seq
943 aa
AA seq
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MGVPAFYRWLADRYPLAISNVVEEEPWEDGEGVLHPVDVSKPNPNAMEFDNLYLDMNGII
HPCFHPDKRPAPTTYDEVFKSMFAYIDHLFTLVRPRKILYMAIDGVAPRAKMNQQRSRRF
RAAKDAAEAEAEEERLRKEFEAEGRILDSKERRETSDSNVITPGTEFMYVLSVALQYYIQ
KRLNNNTGWRRIKVILSDANVPGEGEHKIMSYIRLQRDLPGFDPNTRHCLYGLDADLIML
ALATHEVHFSILREVVTLPSQQEKCFVCGQSGHLAADCRAKPDQNGNLVDDTPIYKKKYQ
FLNIWILREYLQYDLDIPEPPFTVDFERLVDDFVFLCFFVGNDFLPHMPTLEIREGAITL
LMHVYRREFATMGGYLTDAGEVFLDKVEHFVQSVSVHEEQIFQKRVRVQQMFENNEEMRN
RAKRESGEPYVEPPPPVEDKIKLGEPGYKERYYAEKFGASTPEEIDKIRKDVVLKYVEGL
CWVCRYYYQGVCSWQWFYPYHYAPFASDLKDLTDLEITFFLGEPFKPFDQLLGTLPAASS
DALPEMYRKLMTDPSSPLCEFYPADFDIDMNGKRFAWQGVAKLPFIDEKKLLTETKKLEQ
TLTVEELRRNSVMFDLLYVSPAHPLASQIVSYYHFYYQMPPDQRYAWPIDTYASGGMNGY
LWLSERNGWRQVVPSPVGGLPDIMNNQALNVTYLNPLPRKHIPRPPNGVIMPAKEVKNSD
VKPFPLLWHEDNGNRRQFGRERPQVPGAIRGHQLGEAAHRLLKNTLNIKHTNSSPGVLDY
MPHPNHPGNYMFNRPRPGPAGPAGYERGYYDDSNYYGQHHMPRPMSNGYRPNEPRGGRHN
ERLPREDDRGLGGAMSNLTLGGASRNRQPAHTRPRAQTAGLVHMPVQHNNFVQNVGQLPS
PPMNWISQPEDGNNKHFRQMETTVQKQVRQVYQAKTQRPTHQE
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atgggtgttccagcattctacagatggttagctgatcgctatccgttggcaatttctaac
gttgttgaagaagaaccatgggaagacggtgaaggtgttttgcaccctgtcgatgtctca
aaacctaatcctaatgctatggagtttgataatttgtacttggatatgaatgggattatt
cacccttgttttcatcctgataaaaggcctgcacctacaacatatgatgaggtgttcaaa
tcaatgtttgcatacattgatcatctatttacattggttcgtccaaggaaaattctctac
atggcaattgacggagttgctccaagagctaaaatgaatcagcaacgttcccggcgtttc
agagctgccaaagatgctgctgaggctgaagcagaagaggaaagactaagaaaagaattt
gaggctgaaggacggattctagattccaaagaaagacgtgaaactagtgactcaaatgtc
atcactccgggtactgaatttatgtatgtgctctctgtggcacttcagtattacatacag
aagagattgaacaataacactggttggcggaggataaaggttattctctctgatgctaat
gttcctggtgaaggagaacataaaattatgtcctacattcggttacaaagagatctacct
ggctttgatcccaatactcgacactgtttgtacggattggatgctgacttaataatgctg
gctttggccactcatgaggtgcacttttcaattttgcgagaggttgttactttaccttca
cagcaagaaaaatgttttgtatgtgggcaaagtggtcatctggcggctgattgtcgagcc
aagcctgatcaaaacgggaatttggtagatgatacacctatttacaagaaaaaatatcag
ttcctcaacatttggatattgagagaatatctacaatatgacctggatattcctgaacct
ccttttactgtggattttgaacgtttggttgatgattttgtgttcctatgtttttttgtt
ggtaacgacttccttccacatatgcctacactagaaatacgagagggcgctataaccttg
ctgatgcatgtatacagaagagaattcgcaaccatgggagggtatcttactgatgccggt
gaagtttttctggataaagtggagcattttgttcagtcagtttcagttcatgaagagcaa
atcttccagaagcgggttcgtgtacagcagatgttcgagaataatgaagaaatgaggaat
agggcgaaaagagaatcaggagaaccctatgtagagccaccgcctccggtggaagacaag
atcaaacttggggagcctggatataaagagaggtattatgccgagaaatttggtgcatca
actccagaggaaattgacaaaatcaggaaggatgtggttttgaagtatgtagaaggtttg
tgctgggtttgccgttactactaccaaggtgtttgctcatggcaatggttctatccatac
cattatgctccttttgcttcggatctaaaagatttaactgatcttgaaatcacatttttc
cttggagagccattcaagccttttgatcaacttttgggaactctaccggctgcaagctcc
gatgctctaccagagatgtaccggaagttgatgacagatccatcatcaccgttgtgcgag
ttctatcctgcggattttgatatcgacatgaatggtaaacgctttgcttggcagggtgtt
gcaaagttgccattcattgatgaaaagaaattgcttactgaaaccaagaagcttgagcaa
actttaacggtggaagagctacgtcgaaatagtgtgatgtttgatttactatatgtctct
cccgctcatcctttagcttctcaaattgtttcgtattaccatttctactatcagatgcct
cctgatcaaagatatgcttggccaattgacacctatgctagtggtggaatgaatggctat
ttgtggttatccgagagaaatgggtggagacaagtggtcccttccccagtgggtgggcta
cctgatattatgaataaccaagctttaaacgtgacgtacttgaatcccctgcctcgtaaa
cacattccaagacctccaaacggtgtaattatgccggctaaggaagtgaaaaactctgat
gtgaaacctttccccttattatggcatgaagacaatggcaataggcgccaatttggacgg
gaaaggcctcaagtaccaggagcaatacgtgggcatcagttgggtgaagctgctcaccgt
ctcctgaaaaacacgctaaatattaagcatactaattcatctcctggtgtattggattac
atgcctcatccaaatcatcctggcaactacatgtttaataggccgaggccagggcccgct
ggacctgctgggtatgaaagaggctactacgacgacagcaattattacggacaacatcat
atgcctaggccgatgtcaaatggctatagacccaatgaaccacgtggaggtcgacacaat
gagagattaccacgagaagatgatcgtgggttgggaggagctatgtcaaatttgacacta
ggaggggcttctaggaatcgacaaccagcacatacgagaccaagggctcaaaccgcagga
ctcgtgcacatgccagttcaacataacaattttgttcaaaacgtcggtcaacttccatca
ccacccatgaattggattagtcaacccgaagatggaaacaataagcatttccgacagatg
gagacaactgtccagaagcaagtcaggcaagtttatcaagctaagactcaacgaccaaca
catcaagaatga
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