Amaranthus tricolor (tampala): 130810139
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Entry
130810139 CDS
T09367
Name
(RefSeq) sm-like protein LSM3A
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
atri
Amaranthus tricolor (tampala)
Pathway
atri03018
RNA degradation
atri03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
atri00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130810139
09123 Folding, sorting and degradation
03018 RNA degradation
130810139
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
atri03019
]
130810139
03041 Spliceosome [BR:
atri03041
]
130810139
Messenger RNA biogenesis [BR:
atri03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130810139
mRNA degradation factors
5'-3' decay
Lsm complex
130810139
Spliceosome [BR:
atri03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
130810139
Complex C
U2 snRNP components
130810139
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
130810139
NCBI-ProteinID:
XP_057532081
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All DBs
Position
4:29968227..29971367
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AA seq
98 aa
AA seq
DB search
MAATEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTV
EIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA
NT seq
297 nt
NT seq
+upstream
nt +downstream
nt
atggcggccacagaagaggaaagcgcagtgaaggagcctctcgatctcattcgtctcagt
cttgatgaacgtatttacgtcaagcttcgttctgatcgtgaactccgtggcaaactccat
gcttacgatcagcatctgaatatgattcttggagatgttgaagaaattgtgactaccgta
gaaattgatgatgagacctatgaggaaattgttcggactacaaggaggactgttccattt
ctctttgttagaggagatggagtaatactggtgtcacctcctctgaggacagcttga
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